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Report for CCDS31818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31818.1 Public Homo sapiens 12 OR6C1 24 110 108 CCDS HistoryNCBI Gene:390321Re-query CCDS DB by CCDS ID:31818.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379668.3 ENSP00000368990.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379668.3Link to Ensembl Protein Viewer:ENSP00000368990.2Re-query CCDS DB by Nucleotide ID:ENST00000379668Re-query CCDS DB by Protein ID:ENSP00000368990
Original member Current member EBI ENST00000642104.1 ENSP00000492978.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642104.1Link to Ensembl Protein Viewer:ENSP00000492978.1Re-query CCDS DB by Nucleotide ID:ENST00000642104Re-query CCDS DB by Protein ID:ENSP00000492978
Original member Current member NCBI NM_001005182.2 NP_001005182.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005182.2Link to Protein Sequence:NP_001005182.1Re-query CCDS DB by Nucleotide ID:NM_001005182Re-query CCDS DB by Protein ID:NP_001005182Link to BLAST:NP_001005182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005182.1 312 Q96RD1 312 100% 0 0

Chromosomal Locations for CCDS 31818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55320600 55321538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGAAACCATACAGAAATAACAGAGTTTATTCTTCTGGGATTAACAGATGACCCAAATTTTCAGGTTG
TAATCTTTGTCTTCCTGCTCATCACCTACATGCTCAGCATCACTGGGAACCTGACCCTTATCACAATTAC
CCTGCTGGATTCCCACCTGCAGACCCCCATGTATTTCTTCCTCAGAAATTTCTCCATATTAGAAATTTCG
TTCACAACCGTCAGTATACCCAAGTTTCTGGGTAACATTATTTCAGGAGATAAAACCATTTCCTTTAATA
ATTGCATAGTTCAGTTATTTTTCTTCATTCTCTTGGGAGTCACAGAGTTTTACCTTCTGGCTGCCATGTC
CTATGACCGCTATGTGGCCATCTGCAAGCCTCTGCATTGCTTGAGTATCATGAATCGAAGAGTCTGCACA
CTGCTTGTTTTTACTTCTTGGCTGGTTTCATTCTTAATCATATTCCCAGCACTCATGTTGCTTTTAAAGC
TTCATTACTGTAGGTCTAATATTATTGACCATTTTACCTGTGATTATTTTCCACTGCTGCAACTTGCTTG
TTCAGACACAAAATTCTTAGAGGTGATGGGATTTTCTTGTGCTGCGTTTACTCTAATGTTCACTTTGGCA
TTAATATTTCTGTCCTACATATACATTATCAGAACAATTTTGAGAATTCCTTCTACTAGTCAGAGGACAA
AGGCCTTTTCCACATGTTCTTCCCACATGGTTGTTGTCTCCATCTCTTATGGCAGCTGCATTTTTATGTA
CATTAAACCCTCAGCAAAAGATAGAGTGTCCTTGAGCAAGGGAGTGGCAATACTAAACACCTCAGTAGCC
CCCATGATGAACCCCTTTATTTACAGCCTAAGAAATCAGCAAGTCAAGCAAGCTTTCATTAACATGGCAA
GGAAGACTGTATTTTTCACAAGCACATGA

Translation (312 aa):
MRNHTEITEFILLGLTDDPNFQVVIFVFLLITYMLSITGNLTLITITLLDSHLQTPMYFFLRNFSILEIS
FTTVSIPKFLGNIISGDKTISFNNCIVQLFFFILLGVTEFYLLAAMSYDRYVAICKPLHCLSIMNRRVCT
LLVFTSWLVSFLIIFPALMLLLKLHYCRSNIIDHFTCDYFPLLQLACSDTKFLEVMGFSCAAFTLMFTLA
LIFLSYIYIIRTILRIPSTSQRTKAFSTCSSHMVVVSISYGSCIFMYIKPSAKDRVSLSKGVAILNTSVA
PMMNPFIYSLRNQQVKQAFINMARKTVFFTST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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