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Report for CCDS14396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14396.1 Public Homo sapiens X IGBP1 24 110 108 CCDS HistoryNCBI Gene:3476Re-query CCDS DB by CCDS ID:14396.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356413.5 ENSP00000348784.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356413.5Link to Ensembl Protein Viewer:ENSP00000348784.4Re-query CCDS DB by Nucleotide ID:ENST00000356413Re-query CCDS DB by Protein ID:ENSP00000348784
Original member Current member EBI ENST00000342206.10 ENSP00000363661.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342206.10Link to Ensembl Protein Viewer:ENSP00000363661.5Re-query CCDS DB by Nucleotide ID:ENST00000342206Re-query CCDS DB by Protein ID:ENSP00000363661
Original member Current member NCBI NM_001370192.1 NP_001357121.1 Accepted alive Link to Nucleotide Sequence:NM_001370192.1Link to Protein Sequence:NP_001357121.1Re-query CCDS DB by Nucleotide ID:NM_001370192Re-query CCDS DB by Protein ID:NP_001357121Link to BLAST:NP_001357121.1
Original member Current member NCBI NM_001370193.1 NP_001357122.1 Accepted alive Link to Nucleotide Sequence:NM_001370193.1Link to Protein Sequence:NP_001357122.1Re-query CCDS DB by Nucleotide ID:NM_001370193Re-query CCDS DB by Protein ID:NP_001357122Link to BLAST:NP_001357122.1
Original member Current member NCBI NM_001551.3 NP_001542.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001551.3Link to Protein Sequence:NP_001542.1Re-query CCDS DB by Nucleotide ID:NM_001551Re-query CCDS DB by Protein ID:NP_001542Link to BLAST:NP_001542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357121.1 339 P78318 339 100% 0 0
NP_001357122.1 339 P78318 339 100% 0 0
NP_001542.1 339 P78318 339 100% 0 0

Chromosomal Locations for CCDS 14396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 70133948 70134135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70134523 70134816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70146633 70146828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70148761 70148840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70150210 70150322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70165833 70165981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCTGCTGAGGACGAGTTACAGCTGCCGCGGCTCCCCGAGCTGTTCGAAACTGGTAGACAGTTACTGG
ACGAAGTAGAAGTGGCGACTGAACCCGCCGGTTCCCGGATAGTCCAGGAGAAGGTGTTCAAGGGCTTGGA
CCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGCCGAAATGAAGATTTGGAAGAG
ATTGCTTCCACCGACCTGAAGTACCTTTTGGTGCCAGCGTTTCAAGGAGCCCTCACCATGAAACAAGTCA
ACCCCAGCAAGCGTCTAGATCATTTGCAGCGGGCTCGAGAACACTTTATAAACTACTTAACTCAGTGCCA
TTGCTATCATGTGGCAGAGTTTGAGCTGCCCAAAACCATGAACAACTCTGCTGAAAATCACACTGCCAAT
TCCTCCATGGCTTATCCTAGTCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATACAGAGATACAAGC
AGAAGAAGGAGTTGGAGCATAGGTTGTCTGCAATGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGATGA
GCGTGTTCGTGAATATTATCTTCTTCACCTTCAGAGGTGGATTGATATCAGCTTAGAAGAGATTGAGAGC
ATTGACCAGGAAATAAAGATCCTGAGAGAAAGAGACTCTTCAAGAGAGGCATCAACTTCTAACTCATCTC
GCCAGGAGAGGCCTCCAGTGAAACCCTTCATTCTCACTCGGAACATGGCTCAAGCCAAAGTATTTGGAGC
TGGTTATCCAAGTCTGCCAACTATGACGGTGAGTGACTGGTATGAGCAACATCGGAAATATGGAGCATTA
CCGGATCAGGGAATAGCCAAGGCAGCACCAGAGGAATTCAGAAAAGCAGCTCAGCAACAGGAAGAACAAG
AAGAAAAGGAGGAAGAGGATGATGAACAAACACTCCACAGAGCCCGGGAGTGGGATGACTGGAAGGACAC
CCATCCTAGGGGCTATGGGAACCGACAGAACATGGGCTGA

Translation (339 aa):
MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEE
IASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPKTMNNSAENHTAN
SSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVESGQADDERVREYYLLHLQRWIDISLEEIES
IDQEIKILRERDSSREASTSNSSRQERPPVKPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGAL
PDQGIAKAAPEEFRKAAQQQEEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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