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Report for CCDS54853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54853.1 Public Homo sapiens 5 MCIDAS 24 110 108 CCDS HistoryNCBI Gene:345643Re-query CCDS DB by CCDS ID:54853.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513312.3 ENSP00000426359.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000513312.3Link to Ensembl Protein Viewer:ENSP00000426359.1Re-query CCDS DB by Nucleotide ID:ENST00000513312Re-query CCDS DB by Protein ID:ENSP00000426359
Original member Current member NCBI NM_001190787.3 NP_001177716.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190787.3Link to Protein Sequence:NP_001177716.1Re-query CCDS DB by Nucleotide ID:NM_001190787Re-query CCDS DB by Protein ID:NP_001177716Link to BLAST:NP_001177716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177716.1 385 D6RGH6 385 100% 0 0

Chromosomal Locations for CCDS 54853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55220366 55220806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55221016 55221126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55222176 55222399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55222951 55223023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55226576 55226667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55226835 55226931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55227019 55227138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGCAGGCGTGCGGGGGCGGCGCGGCCGGCCGTCGGGCCTTCGACAGCATCTGCCCCAACAGAATGCTGG
CACTGCCGGGCCGGGCGCTGCTCTGCAAGCCGGGGAAGCCGGAGAGGAAGTTCGCTCCTCCGCGGAAGTT
CTTCCCCGGATGCACAGGCGGGAGCCCGGTGTCGGTGTACGAGGATCCCCCGGACGCCGAGCCCACAGCG
CTGCCAGCCCTCACCACCATAGACCTGCAGGACCTCGCTGACTGCTCTTCGCTACTCGGGTCCGACGCGC
CGCCTGGTGGTGACCTGGCCGCCTCGCAGAACCATTCCCACCAAACGGAAGCAGACTTCAATCTGCAAGA
TTTCAGAGACACGGTGGATGATCTCATTTCAGACTCATCCTCTATGATGTCGCCTACCCTGGCCAGCGGA
GACTTCCCCTTCTCTCCTTGCGACATATCACCATTCGGGCCCTGCCTCTCCCCGCCACTGGACCCACGGG
CCCTGCAGTCACCACCGCTGCGCCCTCCAGACGTGCCCCCGCCTGAGCAATACTGGAAGGAGGTGGCGGA
CCAGAACCAGAGAGCGTTGGGAGACGCGCTTGTTGAGAATAATCAACTGCACGTGACATTGACCCAGAAA
CAGGAGGAGATCGCCTCGCTCAAGGAGCGGAACGTGCAGCTGAAGGAACTCGCCAGCCGAACCCGGCACC
TGGCCTCGGTGCTGGATAAGCTGATGATCACACAGTCCCGGGATTGTGGGGCGGCGGCCGAGCCCTTCCT
GCTCAAGGCGAAGGCCAAAAGGAGCCTGGAGGAGTTGGTCAGCGCTGCGGGGCAGGATTGCGCGGAAGTG
GACGCCATCCTGAGGGAGATTTCCGAGCGCTGCGATGAAGCCCTTCAGAGCCGCGATCCCAAGCGGCCCC
GACTGCTGCCAGAGCCCGCGAATACTGACACCAGGCCCGGGAACCTGCATGGCGCCTTCCGGGGGCTGCG
CACAGACTGCAGCCGGAGCGCGTTGAACCTGAGCCACAGTGAGCTGGAGGAGGGCGGCTCCTTCAGCACC
CGCATCCGCAGCCACAGCACCATCCGCACCCTCGCCTTCCCCCAGGGCAATGCCTTCACCATCAGAACAG
CCAACGGGGGTTACAAGTTCCGCTGGGTCCCCAGTTGA

Translation (385 aa):
MQACGGGAAGRRAFDSICPNRMLALPGRALLCKPGKPERKFAPPRKFFPGCTGGSPVSVYEDPPDAEPTA
LPALTTIDLQDLADCSSLLGSDAPPGGDLAASQNHSHQTEADFNLQDFRDTVDDLISDSSSMMSPTLASG
DFPFSPCDISPFGPCLSPPLDPRALQSPPLRPPDVPPPEQYWKEVADQNQRALGDALVENNQLHVTLTQK
QEEIASLKERNVQLKELASRTRHLASVLDKLMITQSRDCGAAAEPFLLKAKAKRSLEELVSAAGQDCAEV
DAILREISERCDEALQSRDPKRPRLLPEPANTDTRPGNLHGAFRGLRTDCSRSALNLSHSELEEGGSFST
RIRSHSTIRTLAFPQGNAFTIRTANGGYKFRWVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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