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Report for CCDS83242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83242.1 Public Homo sapiens 7 ATG9B 24 110 108 CCDS HistoryNCBI Gene:285973Re-query CCDS DB by CCDS ID:83242.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000605952.5 ENSP00000475737.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000605952.5Link to Ensembl Protein Viewer:ENSP00000475737.2Re-query CCDS DB by Nucleotide ID:ENST00000605952Re-query CCDS DB by Protein ID:ENSP00000475737
Original member Current member EBI ENST00000469530.4 ENSP00000479879.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469530.4Link to Ensembl Protein Viewer:ENSP00000479879.1Re-query CCDS DB by Nucleotide ID:ENST00000469530Re-query CCDS DB by Protein ID:ENSP00000479879
Original member Current member EBI ENST00000639579.2 ENSP00000491504.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000639579.2Link to Ensembl Protein Viewer:ENSP00000491504.1Re-query CCDS DB by Nucleotide ID:ENST00000639579Re-query CCDS DB by Protein ID:ENSP00000491504
Original member Current member NCBI NM_001317056.2 NP_001303985.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001317056.2Link to Protein Sequence:NP_001303985.1Re-query CCDS DB by Nucleotide ID:NM_001317056Re-query CCDS DB by Protein ID:NP_001303985Link to BLAST:NP_001303985.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303985.1 924 Q674R7-1 924 100% 0 0

Chromosomal Locations for CCDS 83242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151015896 151016023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151016109 151016235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151016431 151016527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151016688 151016821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151017036 151017272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151017871 151018050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151018294 151018447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151018620 151019374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151021188 151021329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151023045 151023206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151023445 151023509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151023687 151023730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151023874 151024423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2775 nt):
ATGGTGAGCCGAATGGGCTGGGGGGGGAGAAGAAGGCGGCTGGGGCGGTGGGGAGATCTGGGGCCCGGAT
CGGTGCCCCTCCTCCCCATGCCACTGCCACCTCCTCCTCCTCCTTCATGCCGGGGACCTGGGGGAGGGAG
GATCTCCATCTTCTCTCTGTCCCCTGCCCCTCATACAAGAAGCTCCCCCTCCTCATTTTCCCCTCCCACC
GCAGGGCCCCCTTGCTCAGTGCTACAGGGGACAGGGGCTTCTCAGTCTTGCCACAGTGCTCTCCCTATCC
CAGCCACCCCCCCAACACAGGCTCAACCTGCAATGACACCTGCCTCTGCATCTCCCTCCTGGGGATCCCA
CTCCACCCCACCCCTGGCCCCGGCAACCCCCACTCCCTCACAGCAGTGCCCCCAGGACTCTCCTGGGCTG
CGGGTAGGCCCTTTGATCCCTGAACAGGATTATGAGCGGCTGGAGGACTGTGACCCTGAGGGGTCCCAAG
ACTCACCCATCCACGGGGAGGAGCAGCAACCCCTGCTTCATGTCCCTGAAGGGCTCCGAGGCTCCTGGCA
TCACATCCAGAACCTGGACAGTTTCTTCACCAAGATCTACAGCTACCACCAGCGGAATGGCTTTGCCTGC
ATCTTGCTGGAGGATGTCTTCCAGCTGGGACAATTTATTTTCATTGTCACCTTCACAACCTTCCTCCTTC
GATGCGTGGATTACAATGTTCTCTTTGCCAACCAACCAAGTAACCATACCAGACCTGGGCCGTTCCACAG
CAAAGTGACCCTGTCAGATGCCATCCTACCCTCAGCCCAGTGTGCTGAGAGGATCCGCTCCAGCCCGCTG
CTGGTCCTCCTCCTGGTCCTGGCTGCCGGCTTCTGGCTGGTCCAACTGCTTCGCTCAGTCTGCAACCTCT
TCAGCTACTGGGACATCCAGGTGTTTTACAGGGAGGCCCTGCACATCCCCCCGGAGGAGCTGAGCTCGGT
TCCCTGGGCAGAGGTGCAGTCCCGCCTCTTGGCACTGCAGCGGAGCGGGGGCCTGTGCGTGCAGCCGCGG
CCCCTGACGGAGCTGGACATCCACCACCGCATCCTGCGCTACACCAACTACCAGGTGGCGCTGGCCAACA
AAGGCCTGCTGCCGGCCCGCTGCCCGCTGCCCTGGGGAGGCAGTGCGGCTTTCCTCAGCCGCGGCCTGGC
GCTCAATGTCGACCTGCTGCTCTTCCGCGGTCCCTTCTCGCTCTTCCGCGGGGGCTGGGAGCTGCCGCAC
GCCTACAAGCGCAGCGACCAGCGGGGCGCCCTAGCAGCGCGCTGGGGGCGCACAGTGCTGCTGCTGGCCG
CCCTGAACCTGGCGCTGAGCCCGCTGGTGCTGGCCTGGCAGGTTCTGCACGTCTTCTATAGCCACGTGGA
GCTGCTGCGGCGCGAGCCTGGCGCGCTGGGGGCGCGCGGCTGGTCCCGCCTGGCGCGCTTGCAGCTGCGC
CACTTCAACGAGCTGCCGCACGAGCTGCGCGCGCGCCTGGCCCGCGCCTACCGCCCCGCCGCCGCCTTCC
TGCGCACCGCTGCGCCCCCCGCGCCCCTGCGCACGCTGCTGGCCCGCCAGCTCGTTTTCTTCGCGGGTGC
ACTCTTCGCCGCGCTGCTTGTGCTCACCGTCTACGACGAGGACGTGCTAGCCGTGGAGCACGTGCTCACC
GCCATGACCGCGCTCGGGGTCACCGCCACCGTCGCCAGGTCTTTCATTCCGGAAGAGCAGTGCCAGGGTC
GTGCGCCGCAGCTCCTGCTGCAGACAGCCCTGGCCCACATGCACTACCTCCCGGAGGAGCCCGGCCCCGG
CGGCAGGGACCGCGCCTACCGGCAGATGGCGCAGCTGCTGCAGTACCGAGCGGTCTCCCTCCTGGAGGAG
CTCCTGTCCCCGCTCCTCACCCCGCTGTTTCTGCTTTTCTGGTTCCGCCCTCGTGCCCTGGAGATTATCG
ACTTTTTTCATCACTTCACTGTGGATGTGGCTGGGGTTGGGGACATCTGTTCCTTTGCCCTTATGGATGT
GAAGCGCCACGGACACCCTCAGTGGCTCTCGGCGGGACAGACTGAGGCCTCGCTGTCTCAGCGTGCGGAG
GACGGCAAGACTGAGCTTTCTTTGATGCGGTTCTCCCTGGCGCATCCACTCTGGCGCCCCCCAGGGCACA
GCTCTAAGTTTCTTGGGCACCTCTGGGGCCGAGTACAACAAGATGCAGCTGCCTGGGGTGCCACCTCGGC
TCGCGGCCCCTCCACCCCGGGGGTGCTCAGCAACTGCACCTCGCCCCTGCCTGAGGCCTTCCTGGCCAAC
CTCTTCGTGCACCCTCTCCTGCCTCCGAGAGATCTGAGCCCGACAGCCCCCTGTCCAGCTGCGGCCACAG
CCAGCCTCCTTGCCTCCATTTCCCGAATTGCCCAGGACCCCAGCTCTGTGTCCCCAGGAGGCACTGGGGG
CCAGAAGCTGGCCCAGCTCCCAGAACTTGCTTCTGCCGAGATGAGTCTCCATGTCATCTACCTGCACCAG
CTTCACCAGCAGCAGCAGCAGCAGGAGCCGTGGGGTGAGGCTGCAGCCTCCATCCTGTCCAGGCCCTGCT
CCAGCCCCTCACAGCCACCCTCGCCTGATGAGGAGAAGCCATCCTGGTCAAGTGACGGCTCCAGTCCTGC
CTCTAGCCCCAGACAACAGTGGGGAACCCAGAAGGCCCGGAATCTGTTCCCCGGAGGGTTTCAGGTGACC
ACAGACACCCAGAAGGAGCCTGACCGGGCCTCTTGCACTGACTGA

Translation (924 aa):
MVSRMGWGGRRRRLGRWGDLGPGSVPLLPMPLPPPPPPSCRGPGGGRISIFSLSPAPHTRSSPSSFSPPT
AGPPCSVLQGTGASQSCHSALPIPATPPTQAQPAMTPASASPSWGSHSTPPLAPATPTPSQQCPQDSPGL
RVGPLIPEQDYERLEDCDPEGSQDSPIHGEEQQPLLHVPEGLRGSWHHIQNLDSFFTKIYSYHQRNGFAC
ILLEDVFQLGQFIFIVTFTTFLLRCVDYNVLFANQPSNHTRPGPFHSKVTLSDAILPSAQCAERIRSSPL
LVLLLVLAAGFWLVQLLRSVCNLFSYWDIQVFYREALHIPPEELSSVPWAEVQSRLLALQRSGGLCVQPR
PLTELDIHHRILRYTNYQVALANKGLLPARCPLPWGGSAAFLSRGLALNVDLLLFRGPFSLFRGGWELPH
AYKRSDQRGALAARWGRTVLLLAALNLALSPLVLAWQVLHVFYSHVELLRREPGALGARGWSRLARLQLR
HFNELPHELRARLARAYRPAAAFLRTAAPPAPLRTLLARQLVFFAGALFAALLVLTVYDEDVLAVEHVLT
AMTALGVTATVARSFIPEEQCQGRAPQLLLQTALAHMHYLPEEPGPGGRDRAYRQMAQLLQYRAVSLLEE
LLSPLLTPLFLLFWFRPRALEIIDFFHHFTVDVAGVGDICSFALMDVKRHGHPQWLSAGQTEASLSQRAE
DGKTELSLMRFSLAHPLWRPPGHSSKFLGHLWGRVQQDAAAWGATSARGPSTPGVLSNCTSPLPEAFLAN
LFVHPLLPPRDLSPTAPCPAAATASLLASISRIAQDPSSVSPGGTGGQKLAQLPELASAEMSLHVIYLHQ
LHQQQQQQEPWGEAAASILSRPCSSPSQPPSPDEEKPSWSSDGSSPASSPRQQWGTQKARNLFPGGFQVT
TDTQKEPDRASCTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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