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Report for CCDS3292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3292.1 Public Homo sapiens 3 TPRG1 24 110 108 CCDS HistoryNCBI Gene:285386Re-query CCDS DB by CCDS ID:3292.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345063.8 ENSP00000341031.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345063.8Link to Ensembl Protein Viewer:ENSP00000341031.3Re-query CCDS DB by Nucleotide ID:ENST00000345063Re-query CCDS DB by Protein ID:ENSP00000341031
Original member Current member EBI ENST00000433971.5 ENSP00000412547.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433971.5Link to Ensembl Protein Viewer:ENSP00000412547.1Re-query CCDS DB by Nucleotide ID:ENST00000433971Re-query CCDS DB by Protein ID:ENSP00000412547
Original member Current member NCBI NM_198485.4 NP_940887.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198485.4Link to Protein Sequence:NP_940887.1Re-query CCDS DB by Nucleotide ID:NM_198485Re-query CCDS DB by Protein ID:NP_940887Link to BLAST:NP_940887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940887.1 275 Q6ZUI0 275 100% 0 0

Chromosomal Locations for CCDS 3292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 189207385 189207594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 189215292 189215383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 189238733 189238909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 189310386 189310539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 189320626 189320820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGTCAACAATTGGGAGTTTTGAAGGATTCCAGGCTGTGTCTCTGAAGCAAGAGGGAGATGACCAACCCT
CTGAGACTGACCACCTATCGATGGAGGAAGAGGACCCGATGCCAAGACAGATTTCAAGGCAGTCAAGTGT
GACCGAATCAACTCTTTACCCCAATCCTTATCATCAGCCTTATATCTCACGGAAGTACTTTGCTACACGG
CCGGGGGCCATTGAGACTGCCATGGAAGACTTGAAAGGTCACGTAGCTGAGACTTCTGGAGAGACCATTC
AAGGCTTCTGGCTCTTGACAAAGATAGACCACTGGAACAATGAGAAGGAGAGAATTCTACTGGTCACAGA
CAAGACTCTCTTGATCTGCAAATACGACTTCATCATGCTGAGTTGTGTGCAGCTGCAGCGGATTCCTCTG
AGCGCTGTCTATCGCATCTGCCTGGGCAAGTTCACCTTCCCTGGGATGTCCCTGGACAAGAGACAAGGAG
AAGGCCTTAGGATCTACTGGGGGAGTCCGGAGGAGCAGTCTCTTCTGTCCCGCTGGAACCCATGGTCCAC
TGAAGTTCCTTATGCTACTTTCACTGAGCATCCTATGAAATACACCAGTGAGAAATTCCTTGAAATTTGC
AAGTTGTCTGGGTTCATGTCTAAGCTTGTTCCAGCTATCCAGAATGCCCACAAGAATTCAACTGGATCTG
GAAGAGGAAAGAAACTGATGGTGTTAACTGAACCCATTTTGATTGAGACCTACACAGGGCTGATGTCATT
CATTGGAAACCGCAACAAACTTGGCTATTCCCTTGCCCGTGGGAGTATTGGTTTTTGA

Translation (275 aa):
MSTIGSFEGFQAVSLKQEGDDQPSETDHLSMEEEDPMPRQISRQSSVTESTLYPNPYHQPYISRKYFATR
PGAIETAMEDLKGHVAETSGETIQGFWLLTKIDHWNNEKERILLVTDKTLLICKYDFIMLSCVQLQRIPL
SAVYRICLGKFTFPGMSLDKRQGEGLRIYWGSPEEQSLLSRWNPWSTEVPYATFTEHPMKYTSEKFLEIC
KLSGFMSKLVPAIQNAHKNSTGSGRGKKLMVLTEPILIETYTGLMSFIGNRNKLGYSLARGSIGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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