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Report for CCDS46478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46478.1 Public Homo sapiens 2 CCDC150 24 110 108 CCDS HistoryNCBI Gene:284992Re-query CCDS DB by CCDS ID:46478.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389175.9 ENSP00000373827.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389175.9Link to Ensembl Protein Viewer:ENSP00000373827.4Re-query CCDS DB by Nucleotide ID:ENST00000389175Re-query CCDS DB by Protein ID:ENSP00000373827
Original member Current member NCBI NM_001080539.2 NP_001074008.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080539.2Link to Protein Sequence:NP_001074008.1Re-query CCDS DB by Nucleotide ID:NM_001080539Re-query CCDS DB by Protein ID:NP_001074008Link to BLAST:NP_001074008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074008.1 1101 Q8NCX0-1 1101 100% 0 0

Chromosomal Locations for CCDS 46478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 196639767 196639778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196646341 196646504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196656633 196656853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196656958 196657136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196658792 196658860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196665567 196665683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196666719 196666848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196669833 196669876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196672345 196672437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196674241 196674348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196676143 196676267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196676554 196676731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196677293 196677361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196695046 196695159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196701109 196701180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196712145 196712252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196712677 196712739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196718503 196718631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196719497 196719666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196720575 196720668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196721522 196721691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196725973 196726099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196729193 196729387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196729793 196729861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196729957 196730118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196730859 196730945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196732033 196732152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196732446 196732562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3306 nt):
ATGGACTGTAAGGTACATATGGAAACTACAGTGTCCAGACCGGTCCTTTCTCCAACCCACATCAACGCTA
CAGCTTCTGAAACATTCACAGTACTTCAGCAAAGGATGAGAATAGTTGAGGAACAGACCAGTTCACTGAG
GGATGACCTAATAATGTTGGATTTTGGTGAAAAAAGAGGCTATTTGGAAGCTCCAGACTGTTTAGAAGAC
CTGGACAGCCAGAAAGTCATTAGTCCTATCCAAAATGAAGCAATTTGTGCAGGAAAAACAGATATTTTAT
GGAAGAACTGTGAGTTTCTGGTAAATCGAATGTGCCGTCTTGAAAGCCTCATGCAGTCCTTGAAGATGAA
CATCTTTCGGCTGCAAACTGAAAAGGATTTGAATCCTCAGAAAACAGCTTTTCTGAAAGATCGACTGAAT
GCAATACAGGAAGAGCATTCTAAGGACCTGAAGCTGTTGCATCTCGAAGTTATGAATTTGCGCCAGCAAC
TGAGAGCTGTAAAAGAGGAAGAAGACAAGGCACAAGATGAGGTGCAAAGGTTGACTGCCACTCTGAAGAT
TGCCTCGCAGACAAAGAAGAATGCAGCCATTATTGAAGAGGAACTGAAGACCACAAAACGTAAAATGAAC
CTTAAAATTCAAGAGCTAAGGAGACAACTGGCTCAGGAGAAGTACCTTAGGGAATCTTTAGAGAAATCAG
CATCAGCCATGCTCCTCAAAATACAAGAAATGGGATCAACAGTGGAGGTAGAACGAAAACAGGTGCACAT
TTTGCAGCAAAACTGCATTGCTCTACGTGATTCTATACAGAGCGCTCAAGAACTACTGGCCCAGGAACAA
AAAAAAAAAGAAGAGTTGGAGATTGCTACTTCACAGCTCAAATCTGATCTAACTTCTAGAGATGACCTCA
TTTCCAAGTTGGTTGAAGAAAATAAGAACCTGCAGATATCTTTCAACAAGGAACATGAAGAAAATGCATA
TTTGAGGTCCGAAATAATGTCTCTTCATGAAGCATCAGAAAAAGCACAAGTTTTGAATGACCAATTGACT
AAAAAGTGTTCAGAGTTGAGCTGCATGCTTCAGACTGTTACTATGGAAAAAGCCAGAATCATTGCTGACC
ATCAGGCCATTCTGCAGGTAGAGCAGAAAATGATGACGCAGACATTTCAAGAACAAAACTTATTGCTGGA
TGCAGCCCATGCCAGTATCACAAATGAACTACAGACTGTTCAGAATGAGAAAACCCAACTCCAGGCACAT
CTGGATCATTTAATCCTTGAGCATAACCAGTGTATCCAGAAAGCACAGGATGCTGAAAAGAGAACAGCTG
TGCAAAAAGAGCTGCTAGAATCAACTATTGCAAGATTGCGAGGTGAATTGGAAGCATCAATGCAAGAGAA
GAAGTCTCTGCTAGAGGAGAAAGAAAGATTTCAGAGGGAGGTTAATAAAACAGAAAAAGAAATAGTGCAA
GAAAGATGCAATTTGGAAAAGGAATTAGCTAAAAACAAGGTAGACATAAATACATTAACTCATAACCTGC
AGACTCTTGAAGAAGAGAATAAGCACCTGGCAGATCAAATGGCTTCCCTAGAACTTCAGCAAGTCACTTC
TGATTACCATGGGCTTGCCCAACAGAAGGTGGAAAAAATCACTGAAAGTAAAAATAAACTGGCCTATGAA
AACGGAAAACTCCAGATAAAAGTTAAACAGCTAGAAGAACAAGTACAGTCTTTTACTGACACCAGCTTAC
AGAATGATCATCTACGCAAGATGAATAAGTATTTACAGACTAAATATGCTCAGGCAAACTCAGAACTCAG
TGCCAAGAGGGTACACCTGCAGCAGGCAGATGCTCACCTGAAAGAAGTGAAATCTATTCTTGAAAGAAGT
AAAGAGGAGCTGTCCCGAACAGTGAAGTGTCGTAATGCGGCCCTGAAAGAGAGTCAGAAGTTGAAAGAAG
ACCTCGAGGCTGTGGAGGACAGGGAAAACAAGAAGGTGGGAAACTTTCAGCGACAATTGGCAGAAGCTAA
AGAAGACAACTGCAAAGTCACAATCATGTTGGAGAATGTGCTGGCTTCTCACAGTAAGATGCAAGGTGCT
CTGGAGAAAGTACAAATAGAGCTTGGGCGGAGGGATTCAGAGATTGCAGGCCTCAAGAAAGAAAGGGATC
TCAATCAACAGAGGGTGCAGAAGCTGGAAGCTGAAGTGGACCAGTGGCAGGCCAGGATGCTTGTCATGGA
GGACCAGCACAACAGTGAGATTGAATCTCTACAAAAAGCTCTAGGTGTAGCTAGAGAAGACAACAGGAAA
CTTGCTATGAGTCTGGAACAAGCTCTCCAGACAAATAATCATCTGCAAACAAAGCTAGATCACATTCAAG
AGCAATTGGAAAGCAAAGAACTTGAGCGACAGAATTTGGAAACCTTCAAAGACCGGATGACTGAAGAGTC
CAAAGTGGAAGCAGAATTGCATGCTGAACGCATAGAAGCTCTAAGAAAGCAGTTTCAAACCGAGAGAGAA
ACTACAAAGAAAGTGGCACAACGGGAAGTGGCTGAGCTGAAGAAAGCCCTTGATGAAGCTAACTTCAGAT
CAGTGGAAGTGTCCCGGACCAACCGAGAGCTGCGACAGAAACTTGCAGAGCTAGAAAAAATACTAGAAAG
TAACAAGGAGAAAATAAAGAATCAAAAGACCCAAATTAAGCTCCACTTGTCAGCTAAGGCGAATAATGCT
CAGAATATAGAAAGGATGAAGCAAATAGAAAAAGAATTGAAGCAAATGGAGCTAATTAAGGATCAATATC
AGAAAAAGAACTATGAACAGTCTTTGAGTATCCAGAGATTTGTGTGTGAAATGACTAACCTGCAGAAAGA
GATGCAGATGTTGGCTAAGAGCCAATATGATGCCTCAGTGCGGAATAAACAGCAAGAGCTGCACCTAGAA
GCAGAGCGGAAAATAAGGCAGGAGCTAGAGAATCGGTGCCAGGAATTGGAAGAAACTGTCAGACACCTGA
AGAAATGTAAAGAGGCAACAGAGAATACGCTGAAAGAAGCCAGTGTGGAATCAGAACAGATAACAGCTAA
TCTGGAAGAAGCTCATCGCTGGTTTAAGCACAGGTTTGATGGTCTACAACTTGAGCTGACAAAAAACCGG
TTGCAGAGGCCTTCTGGGGAAGACAGGTGGCAGGAAAAGGACCAAGATGTAAAACATGATGTCATGTCCA
ACCAATCTGTTCTGCATCGATGGGAGAGAAAACAGAATCTTAGGCCCATGCCCAAGAAGTATCATTCTGA
GGTACAGAGGAAGTGA

Translation (1101 aa):
MDCKVHMETTVSRPVLSPTHINATASETFTVLQQRMRIVEEQTSSLRDDLIMLDFGEKRGYLEAPDCLED
LDSQKVISPIQNEAICAGKTDILWKNCEFLVNRMCRLESLMQSLKMNIFRLQTEKDLNPQKTAFLKDRLN
AIQEEHSKDLKLLHLEVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMN
LKIQELRRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQ
KKKEELEIATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLT
KKCSELSCMLQTVTMEKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAH
LDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQ
ERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKITESKNKLAYE
NGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQANSELSAKRVHLQQADAHLKEVKSILERS
KEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGA
LEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRK
LAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERE
TTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNA
QNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLE
AERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHRWFKHRFDGLQLELTKNR
LQRPSGEDRWQEKDQDVKHDVMSNQSVLHRWERKQNLRPMPKKYHSEVQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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