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Report for CCDS34061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34061.1 Public Homo sapiens 4 INTU 24 110 108 CCDS HistoryNCBI Gene:27152Re-query CCDS DB by CCDS ID:34061.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34061.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335251.11 ENSP00000334003.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335251.11Link to Ensembl Protein Viewer:ENSP00000334003.5Re-query CCDS DB by Nucleotide ID:ENST00000335251Re-query CCDS DB by Protein ID:ENSP00000334003
Original member Current member NCBI NM_015693.4 NP_056508.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015693.4Link to Protein Sequence:NP_056508.2Re-query CCDS DB by Nucleotide ID:NM_015693Re-query CCDS DB by Protein ID:NP_056508Link to BLAST:NP_056508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056508.2 942 Q9ULD6-1 942 100% 0 0

Chromosomal Locations for CCDS 34061.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127633035 127633180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127643521 127644056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127656636 127656721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127663381 127663584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127669036 127669154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127674124 127674213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127684409 127684486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127687678 127687867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127700010 127700063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127704228 127704290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127705591 127705812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127706487 127706969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127708571 127708668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127710913 127711102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127713936 127714093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127716325 127716436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGGCCTCTGTGGCTTCGTGCGATTCGCGTCCGAGCTCAGACGAGCTCCCTGGAGACCCCTCTTCACAAG
AAGAAGATGAGGACTATGATTTTGAAGATCGGGTCAGCGACTCGGGTTCATATTCCTCAGCGAGTAGCGA
TTATGATGATCTTGAGCCTGAATGGCTGGACAGTGTGCAGAAAAATGGAGAGCTGTTTTATTTGGAATTG
AGTGAGGATGAAGAAGAAAGCCTCCTTCCTGAGACACCAACTGTGAACCATGTCAGGTTCAGTGAAAATG
AGATTATCATTGAAGATGACTACAAAGAAAGAAAAAAGTATGAACCCAAACTCAAGCAGTTTACCAAAAT
TTTAAGAAGGAAAAGACTTTTACCCAAGCGCTGCAATAAAAAAAATAGCAATGACAATGGACCAGTATCC
ATTCTAAAGCATCAGTCCAATCAGAAGACAGGAGTCATTGTCCAACAGCGATACAAAGATGTGAATGTTT
ATGTAAACCCCAAAAAGCTAACTGTTATCAAAGCCAAAGAGCAGCTCAAGCTTCTGGAAGTGCTGGTTGG
AATTATTCATCAGACCAAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAGAGAGGCTTGTGGTT
CATGGCCTGCTGCCAGGGGGATCTGCTATGAAGAGCGGTCAGGTACTCATTGGTGATGTCCTTGTTGCTG
TGAATGATGTCGATGTTACTACTGAAAACATCGAGAGAGTTCTGTCTTGCATTCCTGGACCTATGCAGGT
GAAACTGACATTTGAAAATGCATATGATGTGAAAAGGGAGACGTCCCATCCAAGACAGAAAAAGACACAG
TCCAACACAAGTGATTTAGTCAAGCTTCTCTGGGGAGAAGAGGTTGAAGGTATCCAGCAGAGTGGCCTAA
ACACTCCTCATATCATTATGTATCTCACACTACAGCTCGACTCAGAAACCTCAAAGGAAGAGCAGGAAAT
TCTTTATCATTATCCAATGTCTGAAGCATCTCAGAAACTTAAAAGTGTGAGAGGGATTTTTCTCACACTC
TGTGACATGCTGGAAAACGTAACTGGGACACAAGTTACTAGTTCATCCCTCCTTTTAAATGGAAAACAAA
TTCATGTGGCTTATTGGAAAGAATCTGACAAGTTGTTGCTAATTGGCCTGCCTGCTGAAGAAGTTCCTCT
TCCTCGTCTAAGGAACATGATAGAAAATGTCATCCAAACCTTAAAATTTATGTATGGTTCTTTAGATAGT
GCCTTTTGCCAGATTGAGAATGTTCCTCGTTTGGATCATTTTTTTAACTTGTTCTTTCAAAGAGCACTTC
AGCCTGCGAAACTGCATTCCAGCGCCAGTCCCAGTGCTCAGCAGTACGATGCTTCCAGTGCAGTACTTTT
AGACAACCTCCCTGGAGTCCGGTGGCTCACACTTCCACTGGAAATCAAGATGGAATTAGACATGGCATTA
AGTGACTTGGAGGCTGCAGATTTTGCAGAACTGTCCGAGGATTACTATGACATGAGGCGGCTGTATACAA
TTTTGGGGTCTTCTCTATTTTACAAGGGTTATTTGATATGCAGTCATTTGCCCAAGGATGATCTTATTGA
TATTGCCGTATACTGTCGCCACTATTGCCTGCTGCCTTTAGCAGCAAAACAAAGAATTGGTCAGTTGATC
ATATGGAGAGAAGTGTTTCCTCAGCATCACCTCCGACCTTTGGCAGACTCAAGCACTGAAGTCTTTCCGG
AACCTGAAGGAAGATATTTTTTGCTAGTTGTTGGCTTGAAACATTATATGCTATGTGTACTATTAGAAGC
TGGAGGTTGCGCATCCAAAGCTATTGGGAGTCCTGGACCAGACTGTGTATATGTGGATCAAGTCAAAACA
ACTCTTCACCAGCTGGATGGAGTAGATTCTCGCATAGATGAACGGCTAGCATCTTCTCCAGTCCCCTGTT
TGTCTTGTGCTGACTGGTTCCTTACTGGATCACGTGAAAAAACAGATAGCTTGACCACTTCGCCTATTCT
CAGTAGGCTACAAGGTACTTCCAAAGTAGCAACTTCTCCAACATGCAGAAGAACGCTTTTTGGTGACTAT
TCCTTAAAGACACGCAAGCCTAGTCCTTCCTGTAGTAGTGGAGGATCTGACAATGGTTGTGAAGGTGGAG
AAGATGATGGCTTTAGCCCCCATACTACACCGGATGCAGTACGGAAGCAAAGAGAATCTCAGGGCTCTGA
TGGTTTAGAAGAAAGTGGGACCTTGCTTAAGGTCACTAAAAAGAAGTCTACTCTTCCAAATCCATTTCAT
TTGGGAAACTTGAAAAAGGACCTTCCAGAAAAAGAATTAGAAATATATAACACAGTGAAACTGACATCTG
GTCCTGAGAACACACTTTTCCACTACGTTGCCTTAGAAACAGTGCAAGGAATCTTTATTACTCCTACCCT
TGAAGAGGTGGCACAGCTAAGTGGCTCTATCCACCCTCAGCTAATAAAGAATTTCCATCAGTGTTGTCTT
TCCATTCGTGCAGTTTTCCAACAGACATTGGTGGAAGAGAAAAAGAAAGGACTAAATAGTGGAGACCATT
CAGATTCTGCAAAGTCAGTGTCTTCTCTTAACCCTGTTAAAGAACATGGTGTGTTGTTTGAATGTTCACC
TGGAAACTGGACTGATCAGAAAAAAGCACCACCAGTTATGGCTTACTGGGTAGTAGGGAGACTTTTTCTT
CATCCAAAACCTCAAGAACTTTATGTCTGTTTTCATGACTCAGTCACAGAAATTGCCATTGAAATAGCTT
TTAAATTGTTCTTTGGGTTAACCTTGTAG

Translation (942 aa):
MASVASCDSRPSSDELPGDPSSQEEDEDYDFEDRVSDSGSYSSASSDYDDLEPEWLDSVQKNGELFYLEL
SEDEEESLLPETPTVNHVRFSENEIIIEDDYKERKKYEPKLKQFTKILRRKRLLPKRCNKKNSNDNGPVS
ILKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAKEQLKLLEVLVGIIHQTKWSWRRTGKQGDGERLVV
HGLLPGGSAMKSGQVLIGDVLVAVNDVDVTTENIERVLSCIPGPMQVKLTFENAYDVKRETSHPRQKKTQ
SNTSDLVKLLWGEEVEGIQQSGLNTPHIIMYLTLQLDSETSKEEQEILYHYPMSEASQKLKSVRGIFLTL
CDMLENVTGTQVTSSSLLLNGKQIHVAYWKESDKLLLIGLPAEEVPLPRLRNMIENVIQTLKFMYGSLDS
AFCQIENVPRLDHFFNLFFQRALQPAKLHSSASPSAQQYDASSAVLLDNLPGVRWLTLPLEIKMELDMAL
SDLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAVYCRHYCLLPLAAKQRIGQLI
IWREVFPQHHLRPLADSSTEVFPEPEGRYFLLVVGLKHYMLCVLLEAGGCASKAIGSPGPDCVYVDQVKT
TLHQLDGVDSRIDERLASSPVPCLSCADWFLTGSREKTDSLTTSPILSRLQGTSKVATSPTCRRTLFGDY
SLKTRKPSPSCSSGGSDNGCEGGEDDGFSPHTTPDAVRKQRESQGSDGLEESGTLLKVTKKKSTLPNPFH
LGNLKKDLPEKELEIYNTVKLTSGPENTLFHYVALETVQGIFITPTLEEVAQLSGSIHPQLIKNFHQCCL
SIRAVFQQTLVEEKKKGLNSGDHSDSAKSVSSLNPVKEHGVLFECSPGNWTDQKKAPPVMAYWVVGRLFL
HPKPQELYVCFHDSVTEIAIEIAFKLFFGLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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