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Report for CCDS1888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1888.1 Public Homo sapiens 2 APLF 24 110 108 CCDS HistoryNCBI Gene:200558Re-query CCDS DB by CCDS ID:1888.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303795.9 ENSP00000307004.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303795.9Link to Ensembl Protein Viewer:ENSP00000307004.4Re-query CCDS DB by Nucleotide ID:ENST00000303795Re-query CCDS DB by Protein ID:ENSP00000307004
Original member Current member NCBI NM_173545.3 NP_775816.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173545.3Link to Protein Sequence:NP_775816.1Re-query CCDS DB by Nucleotide ID:NM_173545Re-query CCDS DB by Protein ID:NP_775816Link to BLAST:NP_775816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775816.1 511 Q8IW19 511 100% 0 0

Chromosomal Locations for CCDS 1888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68467732 68467827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68490190 68490261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68502731 68502903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68513080 68513227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68513548 68513680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68526061 68526242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68537872 68538227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68545187 68545312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68567341 68567387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68577820 68578022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGTCCGGGGGCTTCGAGCTGCAGCCGCGGGACGGCGGTCCCCGGGTGGCCCTGGCGCCCGGGGAGACGG
TGATCGGCCGCGGGCCGCTGCTGGGAATAACAGACAAGAGAGTATCCAGAAGACATGCCATTCTTGAGGT
GGCAGGTGGTCAGCTGCGAATCAAACCGATACACACAAATCCATGTTTTTACCAGTCTTCAGAGAAGAGT
CAGCTCTTACCATTGAAGCCAAATCTATGGTGCTATTTGAATCCTGGAGACAGCTTTTCTTTGTTAGTTG
ACAAATACATTTTCCGCATTCTCTCTATACCCTCTGAAGTGGAAATGCAATGTACCTTAAGAAACAGTCA
AGTGCTTGATGAAGATAATATATTGAATGAAACACCAAAATCCCCCGTGATTAATTTACCTCATGAGACT
ACTGGTGCCTCACAACTGGAAGGAAGCACAGAAATAGCCAAGACCCAGATGACTCCCACAAATAGTGTGT
CTTTCCTAGGTGAAAATAGAGACTGCAATAAGCAGCAGCCAATCCTTGCCGAGAGGAAAAGAATCCTTCC
AACTTGGATGTTAGCAGAACATTTAAGTGATCAAAACCTTTCAGTACCAGCAATCAGTGGAGGTAATGTA
ATCCAGGGAAGTGGAAAAGAAGAAATCTGCAAAGATAAATCCCAGCTAAACACAACCCAGCAAGGAAGAA
GGCAATTAATTTCATCAGGAAGTTCAGAAAATACATCAGCAGAACAAGACACAGGAGAAGAGTGCAAAAA
TACTGATCAGGAAGAGTCTACCATTTCATCCAAGGAAATGCCACAATCATTTTCTGCAATCACATTAAGT
AACACAGAGATGAATAATATTAAGACTAATGCACAGAGAAACAAACTTCCAATAGAGGAACTTGGTAAAG
TTTCTAAACATAAAATTGCCACTAAAAGAACACCACATAAAGAAGATGAGGCAATGAGCTGTTCTGAAAA
TTGTTCGAGTGCCCAGGGCGACTCACTTCAGGATGAGTCTCAAGGGTCTCATTCTGAGTCCAGCTCTAAT
CCCTCCAATCCTGAAACTTTGCATGCAAAGGCAACTGATTCAGTTCTACAAGGTTCTGAAGGAAACAAGG
TCAAGAGGACATCCTGCATGTATGGGGCAAACTGCTATAGGAAGAATCCTGTTCATTTTCAACATTTTAG
CCATCCTGGTGATAGTGATTATGGAGGTGTACAAATCGTGGGCCAAGATGAGACTGATGACCGGCCTGAA
TGTCCCTATGGACCATCCTGTTATAGGAAGAATCCCCAGCACAAGATAGAATATAGACATAATACGCTTC
CAGTGAGAAATGTTTTAGATGAAGATAATGATAATGTTGGGCAACCCAATGAGTATGACCTGAACGACAG
CTTTCTAGATGATGAGGAAGAAGACTATGAGCCAACAGATGAAGATTCTGACTGGGAACCAGGAAAGGAA
GATGAAGAGAAGGAAGATGTGGAAGAGCTTTTGAAAGAAGCAAAAAGGTTTATGAAAAGAAAATAG

Translation (511 aa):
MSGGFELQPRDGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVAGGQLRIKPIHTNPCFYQSSEKS
QLLPLKPNLWCYLNPGDSFSLLVDKYIFRILSIPSEVEMQCTLRNSQVLDEDNILNETPKSPVINLPHET
TGASQLEGSTEIAKTQMTPTNSVSFLGENRDCNKQQPILAERKRILPTWMLAEHLSDQNLSVPAISGGNV
IQGSGKEEICKDKSQLNTTQQGRRQLISSGSSENTSAEQDTGEECKNTDQEESTISSKEMPQSFSAITLS
NTEMNNIKTNAQRNKLPIEELGKVSKHKIATKRTPHKEDEAMSCSENCSSAQGDSLQDESQGSHSESSSN
PSNPETLHAKATDSVLQGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPE
CPYGPSCYRKNPQHKIEYRHNTLPVRNVLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE
DEEKEDVEELLKEAKRFMKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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