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Report for CCDS35085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35085.1 Public Homo sapiens 9 CYLC2 24 110 108 CCDS HistoryNCBI Gene:1539Re-query CCDS DB by CCDS ID:35085.1See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35085.1
This CCDS ID is based on a transcript that is a candidate for nonsense-mediated decay (NMD); however, the protein is supported by experimental evidence (PMID 7737358, 12747772) and by protein homology.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 35085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487798.5 ENSP00000417674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487798.5Link to Ensembl Protein Viewer:ENSP00000417674.1Re-query CCDS DB by Nucleotide ID:ENST00000487798Re-query CCDS DB by Protein ID:ENSP00000417674
Original member Current member EBI ENST00000374798.8 ENSP00000420256.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374798.8Link to Ensembl Protein Viewer:ENSP00000420256.1Re-query CCDS DB by Nucleotide ID:ENST00000374798Re-query CCDS DB by Protein ID:ENSP00000420256
Original member Current member EBI ENST00000612124.4 ENSP00000478399.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612124.4Link to Ensembl Protein Viewer:ENSP00000478399.1Re-query CCDS DB by Nucleotide ID:ENST00000612124Re-query CCDS DB by Protein ID:ENSP00000478399
Original member Current member NCBI NM_001340.5 NP_001331.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001340.5Link to Protein Sequence:NP_001331.1Re-query CCDS DB by Nucleotide ID:NM_001340Re-query CCDS DB by Protein ID:NP_001331Link to BLAST:NP_001331.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001331.1 348 Q14093 348 100% 0 0

Chromosomal Locations for CCDS 35085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 102995381 102995397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103001578 103001618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103003142 103003263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103004695 103004851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103004969 103005678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGTCTCTCCCAAGATTCCAAAGAGTAAACTTTGGGCCATATGATAATTACATTCCAGTCAGTGAATTAA
GCAAAAAATCATGGAATCAGCAACACTTTGCCCTGTTATTTCCCAAACCACAACGGCCAGGAACCAAAAG
GAGATCAAAACCTTCTCAAATACGGGACAACACGGTTTCTATAATTGATGAAGAACAATTAAGAGGAGAT
CGTAGACAACCATTATGGATGTACCGTTCTTTAATGAGAATTTCTGAGAGACCATCTGTTTATTTAGCTG
CCAGGAGGCAGCCTCTCAAACCAACTCGTACTGTCGAGGTGGATTCTAAAGCAGCAGAAATTGGTAAGAA
AGGTGAAGACAAGACAACACAGAAGGACACAACAGATTCGGAATCAGAATTAAAACAAGGAAAAAAAGAT
TCAAAGAAAGGCAAGGATATAGAGAAAGGAAAAGAAGAAAAGCTAGATGCAAAGAAAGATAGCAAAAAAG
GTAAAAAGGATGCAGAGAAGGGCAAAGACTCAGCAACAGAATCTGAAGATGAAAAAGGAGGTGCAAAGAA
AGATAACAAAAAAGATAAAAAGGATTCAAACAAAGGCAAAGACTCGGCAACAGAATCTGAAGGTGAAAAA
GGAGGTACAGAGAAAGATAGCAAAAAAGGTAAAAAGGATTCAAAGAAGGGCAAGGATTCAGCCATAGAAT
TACAAGCTGTAAAAGCAGATGAAAAGAAGGATGAGGATGGAAAAAAAGATGCAAACAAAGGTGATGAATC
GAAGGATGCCAAGAAAGATGCAAAGGAGATTAAAAAAGGTAAGAAAGATAAGAAGAAGCCCAGTAGTACA
GACAGTGACTCAAAGGATGATGTCAAGAAAGAGTCTAAGAAGGACGCCACGAAAGATGCCAAGAAAGTTG
CCAAGAAAGATACTGAGAAAGAATCTGCTGATTCAAAGAAGGATGCAAAGAAAAATGCTAAGAAGGATGC
AAAGAAGGATGCAAAGAAGAATGCAAAGAAGGATGAAAAGAAGGATGCAAAGAAGAAGGGCAAGTAG

Translation (348 aa):
MSLPRFQRVNFGPYDNYIPVSELSKKSWNQQHFALLFPKPQRPGTKRRSKPSQIRDNTVSIIDEEQLRGD
RRQPLWMYRSLMRISERPSVYLAARRQPLKPTRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKD
SKKGKDIEKGKEEKLDAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEK
GGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDAKKDAKEIKKGKKDKKKPSST
DSDSKDDVKKESKKDATKDAKKVAKKDTEKESADSKKDAKKNAKKDAKKDAKKNAKKDEKKDAKKKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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