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Report for CCDS13799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13799.1 Public Homo sapiens 22 ZNF280B 24 110 108 CCDS HistoryNCBI Gene:140883Re-query CCDS DB by CCDS ID:13799.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13799.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619852.2 ENSP00000480958.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619852.2Link to Ensembl Protein Viewer:ENSP00000480958.1Re-query CCDS DB by Nucleotide ID:ENST00000619852Re-query CCDS DB by Protein ID:ENSP00000480958
Original member Current member EBI ENST00000613655.1 ENSP00000481008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613655.1Link to Ensembl Protein Viewer:ENSP00000481008.1Re-query CCDS DB by Nucleotide ID:ENST00000613655Re-query CCDS DB by Protein ID:ENSP00000481008
Original member Current member EBI ENST00000626650.3 ENSP00000485750.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000626650.3Link to Ensembl Protein Viewer:ENSP00000485750.1Re-query CCDS DB by Nucleotide ID:ENST00000626650Re-query CCDS DB by Protein ID:ENSP00000485750
Original member Current member NCBI NM_080764.4 NP_542942.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080764.4Link to Protein Sequence:NP_542942.2Re-query CCDS DB by Nucleotide ID:NM_080764Re-query CCDS DB by Protein ID:NP_542942Link to BLAST:NP_542942.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542942.2 543 Q86YH2 543 100% 0 0

Chromosomal Locations for CCDS 13799.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 22487767 22489398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGAACAATCATGTGAGGAAGAGAAAGAGCCTGAACCACAGAAGAACATACAAGAAACCAAACAAGTAG
ATGACGAAGATGCTGAGCTCATCTTTGTTGGTGTGGAACATGTAAATGAAGATGCTGAGCTAATCTTTGT
TGGGGTGACTTCAAATTCAAAACCAGTCGTTTCAAACATTTTGAACAGAGTCACCCCGGGTTCATGGTCA
AGGAGAAAAAAGTATGATCACCTTAGAAAAGATACTGCTCGCAAATTGCAGCCTAAAAGTCATGAGACCG
TTACATCAGAAGCAGTGACCGTCCTGCCAGCTTCCCAACTTGAATCGAGATCAACAGATAGTCCTATTAT
TATTGAGCCTTTGTCTAAACCTGATTATAGAAATAGTTCACCACAAGTTGTGCCTAATAACTCTTCAGAA
TTACCTTCTCCTTTGATTACATTCACAGATTCATTGCATCATCCAGTAAGTACAGCACTTTCAGTAGGAG
GTATAAATGAAAGTCCTCGTGTATCAAAGCAACTTTCCACTTTCGAAGTAAACAGCATAAATCCCAAAAG
GGCTAAACTCAGGGATGGAATTATAGAAGGAAATTCTTCAGCTTCATTCCCTTCAGATACCTTTCATACA
ATGAATACTCAGCAAAGTACACCCTCAAATAATGTTCATACCTCATTAAGCCATGTTCAGAATGGAGCAC
CTTTTCCAGCAGCTTTTCCAAAGGACAATATCCATTTCAAGCCTATAAATACAAATCTTGATAGGGCAAA
TGAATTGGCAAAAACAGACATTTTGAGTCTAACAAGTCAAAACAAGACCTTTGATCCCAAGAAAGAAAAT
CCCATTGTGTTACTTAGTGACTTTTACTATGGACAGCATAAAGGAGAAGGGCAGCCGGAACAGAAGACTC
ACACCACCTTTAAATGCCTCAGCTGCGTGAAAGTTCTAAAAAATGTTAAGTTTATGAATCACGTGAAGCA
TCATTTGGAATTTGAGAAGCAGAGGAACGACAGCTGGGAAAACCACACCACCTGCCAGCACTGCCACCGG
CAGTTTCCCACTCCCTTCCAGCTACAGTGTCACATCGAAAATGTCCACACTGCCCAGGAGCCCTCTACTG
TCTGTAAAATCTGTGAATTGTCATTTGAAACAGATCAGGTCCTCTTACAACACATGAAGGACCATCATAA
GCCTGGCGAAATGCCCTATGTGTGCCAGGTTTGCCATTATAGATCGTCGGTCTTTGCTGATGTAGAAACA
CATTTTAGAACGTGCCATGAAAACACAAAGAATTTGCTTTGTCCCTTTTGTCTCAAAATTTTCAAAACAG
CAACACCATACATGTGTCATTATAGGGGCCACTGGGGAAAGAGTGCACACCAGTGTTCCAAGTGCCGGCT
ACAGTTTTTAACTTTCAAGGAGAAAATGGAGCACAAGACCCAGTGTCATCAAATGTTTAAGAAGCCTAAG
CAACTAGAAGGATTACCTCCTGAAACAAAAGTTACTATTCAAGTGTCGCTGGAACCTCTTCAGCCAGGAT
CAGTGGATGTAGCATCCATAACTGTGAGCACATCTGACTCTGAACCATCACTCCCCAGGTCTAAAAGCAA
AATTTCAAAAAAGTCCCATTAA

Translation (543 aa):
MEQSCEEEKEPEPQKNIQETKQVDDEDAELIFVGVEHVNEDAELIFVGVTSNSKPVVSNILNRVTPGSWS
RRKKYDHLRKDTARKLQPKSHETVTSEAVTVLPASQLESRSTDSPIIIEPLSKPDYRNSSPQVVPNNSSE
LPSPLITFTDSLHHPVSTALSVGGINESPRVSKQLSTFEVNSINPKRAKLRDGIIEGNSSASFPSDTFHT
MNTQQSTPSNNVHTSLSHVQNGAPFPAAFPKDNIHFKPINTNLDRANELAKTDILSLTSQNKTFDPKKEN
PIVLLSDFYYGQHKGEGQPEQKTHTTFKCLSCVKVLKNVKFMNHVKHHLEFEKQRNDSWENHTTCQHCHR
QFPTPFQLQCHIENVHTAQEPSTVCKICELSFETDQVLLQHMKDHHKPGEMPYVCQVCHYRSSVFADVET
HFRTCHENTKNLLCPFCLKIFKTATPYMCHYRGHWGKSAHQCSKCRLQFLTFKEKMEHKTQCHQMFKKPK
QLEGLPPETKVTIQVSLEPLQPGSVDVASITVSTSDSEPSLPRSKSKISKKSH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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