NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8905.1 Public Homo sapiens 12 MYL6B 24 110 108 CCDS HistoryNCBI Gene:140465Re-query CCDS DB by CCDS ID:8905.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000550443.5 ENSP00000446643.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000550443.5Link to Ensembl Protein Viewer:ENSP00000446643.1Re-query CCDS DB by Nucleotide ID:ENST00000550443Re-query CCDS DB by Protein ID:ENSP00000446643
Original member Current member EBI ENST00000553066.5 ENSP00000450385.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553066.5Link to Ensembl Protein Viewer:ENSP00000450385.1Re-query CCDS DB by Nucleotide ID:ENST00000553066Re-query CCDS DB by Protein ID:ENSP00000450385
Original member Current member EBI ENST00000695999.1 ENSP00000512320.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695999.1Link to Ensembl Protein Viewer:ENSP00000512320.1Re-query CCDS DB by Nucleotide ID:ENST00000695999Re-query CCDS DB by Protein ID:ENSP00000512320
Original member Current member NCBI NM_001199629.2 NP_001186558.1 Accepted alive Link to Nucleotide Sequence:NM_001199629.2Link to Protein Sequence:NP_001186558.1Re-query CCDS DB by Nucleotide ID:NM_001199629Re-query CCDS DB by Protein ID:NP_001186558Link to BLAST:NP_001186558.1
Original member Current member NCBI NM_002475.5 NP_002466.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002475.5Link to Protein Sequence:NP_002466.1Re-query CCDS DB by Nucleotide ID:NM_002475Re-query CCDS DB by Protein ID:NP_002466Link to BLAST:NP_002466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186558.1 208 P14649 208 100% 0 0
NP_002466.1 208 P14649 208 100% 0 0

Chromosomal Locations for CCDS 8905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56153919 56154092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56154813 56154840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56155055 56155198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56155419 56155592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56157468 56157545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56157698 56157726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGCCTCCCAAGAAGGATGTTCCCGTGAAGAAACCAGCAGGGCCCTCCATCTCCAAACCTGCTGCTAAGC
CAGCAGCAGCAGGGGCTCCTCCAGCCAAGACCAAAGCTGAGCCAGCTGTCCCCCAGGCCCCTCAGAAAAC
CCAGGAGCCTCCAGTCGATCTCTCCAAAGTGGTGATCGAGTTTAACAAGGACCAGCTGGAGGAGTTCAAG
GAGGCCTTCGAGCTGTTTGACCGAGTGGGGGATGGCAAGATCCTGTACAGCCAGTGTGGGGACGTGATGA
GGGCCCTGGGCCAGAACCCCACCAACGCCGAGGTGCTCAAGGTCCTGGGGAACCCCAAGAGTGATGAGCT
GAAGTCGCGGCGTGTGGACTTTGAGACTTTCCTGCCCATGCTCCAGGCAGTGGCCAAGAACCGAGGCCAA
GGCACATATGAGGACTACTTGGAGGGGTTTCGTGTGTTTGACAAGGAGGGGAACGGCAAAGTCATGGGAG
CAGAGCTCAGACATGTTCTCACCACCCTTGGAGAGAAGATGACTGAGGAGGAGGTGGAGACCGTTCTGGC
AGGACACGAGGACAGCAACGGCTGCATCAACTACGAGGCCTTCTTGAAACACATCCTAAGCGTCTGA

Translation (208 aa):
MPPKKDVPVKKPAGPSISKPAAKPAAAGAPPAKTKAEPAVPQAPQKTQEPPVDLSKVVIEFNKDQLEEFK
EAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQ
GTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH