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Report for CCDS78264.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78264.2 Public Homo sapiens 7 SH2B2 24 110 108 CCDS HistoryNCBI Gene:10603Re-query CCDS DB by CCDS ID:78264.2See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 78264.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444095.3 ENSP00000401883.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444095.3Link to Ensembl Protein Viewer:ENSP00000401883.3Re-query CCDS DB by Nucleotide ID:ENST00000444095Re-query CCDS DB by Protein ID:ENSP00000401883
Original member Current member EBI ENST00000536178.3 ENSP00000440273.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536178.3Link to Ensembl Protein Viewer:ENSP00000440273.4Re-query CCDS DB by Nucleotide ID:ENST00000536178Re-query CCDS DB by Protein ID:ENSP00000440273
Original member Current member NCBI NM_001359228.2 NP_001346157.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001359228.2Link to Protein Sequence:NP_001346157.1Re-query CCDS DB by Nucleotide ID:NM_001359228Re-query CCDS DB by Protein ID:NP_001346157Link to BLAST:NP_001346157.1
Original member Current member NCBI NM_001359229.2 NP_001346158.1 Accepted alive Link to Nucleotide Sequence:NM_001359229.2Link to Protein Sequence:NP_001346158.1Re-query CCDS DB by Nucleotide ID:NM_001359229Re-query CCDS DB by Protein ID:NP_001346158Link to BLAST:NP_001346158.1
Original member Current member NCBI NM_001393991.3 NP_001380920.2 Accepted alive Link to Nucleotide Sequence:NM_001393991.3Link to Protein Sequence:NP_001380920.2Re-query CCDS DB by Nucleotide ID:NM_001393991Re-query CCDS DB by Protein ID:NP_001380920Link to BLAST:NP_001380920.2
Original member Current member NCBI NM_001393993.1 NP_001380922.1 Accepted alive Link to Nucleotide Sequence:NM_001393993.1Link to Protein Sequence:NP_001380922.1Re-query CCDS DB by Nucleotide ID:NM_001393993Re-query CCDS DB by Protein ID:NP_001380922Link to BLAST:NP_001380922.1
Original member Current member NCBI NM_001393994.1 NP_001380923.1 Accepted alive Link to Nucleotide Sequence:NM_001393994.1Link to Protein Sequence:NP_001380923.1Re-query CCDS DB by Nucleotide ID:NM_001393994Re-query CCDS DB by Protein ID:NP_001380923Link to BLAST:NP_001380923.1
Original member Current member NCBI NM_001394426.1 NP_001381355.1 Accepted alive Link to Nucleotide Sequence:NM_001394426.1Link to Protein Sequence:NP_001381355.1Re-query CCDS DB by Nucleotide ID:NM_001394426Re-query CCDS DB by Protein ID:NP_001381355Link to BLAST:NP_001381355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346157.1 632 O14492-1 632 100% 0 0
NP_001346158.1 632 O14492-1 632 100% 0 0
NP_001380920.2 632 O14492-1 632 100% 0 0
NP_001380922.1 632 O14492-1 632 100% 0 0
NP_001380923.1 632 O14492-1 632 100% 0 0
NP_001381355.1 632 O14492-1 632 100% 0 0

Chromosomal Locations for CCDS 78264.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102300551 102301279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102306721 102306822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102308815 102308906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102314336 102314427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102314512 102314682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102317187 102317395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102320331 102320502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102321299 102321630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGAATGGTGCCGGCCCTGGCCCCGCCGCAGCCGCCCCGGTCCCAGTCCCGGTCCCGGTCCCGGACTGGC
GGCAGTTCTGCGAGCTGCATGCGCAGGCGGCCGCCGTGGACTTTGCGCACAAGTTCTGCCGTTTCCTGCG
GGACAACCCAGCTTACGACACGCCCGACGCCGGCGCCTCCTTCTCCCGCCACTTCGCCGCCAACTTCCTG
GACGTCTTCGGCGAGGAGGTGCGCCGCGTGCTGGTGGCTGGGCCGACGACTCGGGGCGCGGCCGTGAGCG
CAGAGGCCATGGAGCCGGAGCTCGCGGACACCTCTGCACTCAAGGCGGCGCCCTACGGCCACTCGCGGAG
CTCGGAGGACGTGTCCACGCACGCGGCCACCAAGGCCCGCGTTCGCAAGGGCTTCTCGCTGCGCAACATG
AGCCTGTGCGTGGTGGACGGCGTGCGCGACATGTGGCACCGGCGCGCCTCGCCCGAGCCCGACGCGGCAG
CTGCCCCGCGCACCGCCGAGCCCCGCGACAAGTGGACGCGGCGCCTGAGGCTGTCGCGGACGCTGGCTGC
CAAGGTGGAGCTGGTGGACATTCAACGCGAGGGGGCGCTGCGCTTCATGGTGGCCGACGACGCGGCCGCG
GGCTCCGGGGGCTCGGCTCAGTGGCAGAAGTGCCGCCTGCTCCTGCGCAGGGCTGTGGCCGAGGAACGCT
TCCGCCTGGAGTTCTTCGTGCCGCCCAAAGCCTCCAGGCCCAAGGTCAGCATCCCACTGTCAGCCATCAT
TGAGGTCCGCACCACCATGCCCCTGGAAATGCCAGAGAAGGATAACACATTCGTCCTCAAGGTAGAGAAT
GGAGCCGAATACATCTTGGAGACCATCGACTCTCTGCAGAAGCACTCGTGGGTAGCTGACATCCAGGGCT
GCGTGGACCCCGGTGACAGTGAGGAAGACACCGAGCTCTCCTGTACCCGAGGAGGCTGTCTGGCCAGCCG
CGTGGCCTCCTGCAGCTGTGAGCTCCTGACTGATGCAGTCGACCTGCCCCGCCCCCCAGAGACGACAGCC
GTGGGTGCAGTGGTGACAGCCCCCCACAGCCGAGGTCGAGATGCCGTCAGAGAATCCCTGATCCACGTCC
CGCTAGAGACCTTTCTGCAGACCCTGGAATCCCCGGGCGGCAGCGGCAGTGACAGCAATAACACAGGGGA
ACAGGGTGCAGAGACGGATCCCGAGGCTGAACCCGAGCTGGAGCTATCCGACTACCCATGGTTCCACGGG
ACACTGTCCCGGGTCAAGGCTGCTCAACTGGTTCTGGCAGGGGGGCCCCGGAACCACGGCCTCTTCGTGA
TCCGCCAAAGTGAGACTCGGCCTGGGGAGTACGTGCTGACCTTCAACTTCCAGGGCAAGGCCAAGCACCT
GCGCCTGTCCCTGAACGGCCACGGCCAGTGTCACGTACAGCATCTGTGGTTCCAGTCTGTGCTTGACATG
CTCCGCCACTTCCACACACACCCCATCCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCAGCT
ATGTGCGGGCCCAGGACCCCCCACCAGAGCCGGGCCCCACGCCCCCTGCCGCGCCCGCGTCCCCGGCCTG
CTGGAGCGACTCGCCCGGCCAGCACTACTTCTCCAGCCTCGCCGCGGCCGCCTGCCCGCCTGCCTCGCCC
TCCGACGCCGCCGGCGCCTCCTCGTCTTCCGCCTCGTCGTCCTCTGCCGCGTCGGGGCCCGCCCCCCCGC
GCCCCGTCGAGGGCCAGCTCAGCGCGCGGAGCCGCAGCAACAGCGCCGAGCGCCTGCTGGAGGCCGTGGC
CGCCACCGCCGCCGAGGAGCCCCCGGAGGCCGCGCCCGGCCGCGCGCGCGCCGTGGAGAACCAGTACTCC
TTCTACTAG

Translation (632 aa):
MNGAGPGPAAAAPVPVPVPVPDWRQFCELHAQAAAVDFAHKFCRFLRDNPAYDTPDAGASFSRHFAANFL
DVFGEEVRRVLVAGPTTRGAAVSAEAMEPELADTSALKAAPYGHSRSSEDVSTHAATKARVRKGFSLRNM
SLCVVDGVRDMWHRRASPEPDAAAAPRTAEPRDKWTRRLRLSRTLAAKVELVDIQREGALRFMVADDAAA
GSGGSAQWQKCRLLLRRAVAEERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVEN
GAEYILETIDSLQKHSWVADIQGCVDPGDSEEDTELSCTRGGCLASRVASCSCELLTDAVDLPRPPETTA
VGAVVTAPHSRGRDAVRESLIHVPLETFLQTLESPGGSGSDSNNTGEQGAETDPEAEPELELSDYPWFHG
TLSRVKAAQLVLAGGPRNHGLFVIRQSETRPGEYVLTFNFQGKAKHLRLSLNGHGQCHVQHLWFQSVLDM
LRHFHTHPIPLESGGSADITLRSYVRAQDPPPEPGPTPPAAPASPACWSDSPGQHYFSSLAAAACPPASP
SDAAGASSSSASSSSAASGPAPPRPVEGQLSARSRSNSAERLLEAVAATAAEEPPEAAPGRARAVENQYS
FY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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