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Report for CCDS9987.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9987.2 Public Homo sapiens 14 TDRD9 24 110 108 CCDS HistoryNCBI Gene:122402Re-query CCDS DB by CCDS ID:9987.2Re-query CCDS DB by GeneID:122402See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9987.1
The coding region has been updated to add additional internal exons based on transcript and homology support, and to extend the N-terminus to one that is more supported by available transcript and conservation data. The update adds a DEAD/DEAH box helicase domain in addition to the Helicase conserved C-terminal domain and a Tudor domain.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9987.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409874.9 ENSP00000387303.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409874.9Link to Ensembl Protein Viewer:ENSP00000387303.4Re-query CCDS DB by Nucleotide ID:ENST00000409874Re-query CCDS DB by Protein ID:ENSP00000387303
Original member Current member NCBI NM_153046.3 NP_694591.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153046.3Link to Protein Sequence:NP_694591.2Re-query CCDS DB by Nucleotide ID:NM_153046Re-query CCDS DB by Protein ID:NP_694591Link to BLAST:NP_694591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694591.2 1382 Q8NDG6-1 1382 100% 0 0

Chromosomal Locations for CCDS 9987.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 103928510 103928724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103955664 103955770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103963079 103963176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103965333 103965554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103966709 103966831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103970541 103970621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103975389 103975553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103986217 103986320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103991160 103991224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103994332 103994386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103994519 103994603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103995750 103995807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103998624 103998728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104004238 104004335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104005274 104005405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104006389 104006554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104006646 104006709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104006782 104006845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104007160 104007204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104008413 104008466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104014725 104014841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104015981 104016088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104018092 104018192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104022157 104022330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104024569 104024680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104025564 104025776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104026047 104026136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104026679 104026939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104031108 104031263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104032017 104032087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104033960 104034069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104034960 104035056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104040196 104040334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104042069 104042187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104049608 104049680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104051981 104052082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4149 nt):
ATGCTGCGGAAGCTCACCATCGAGCAGATCAACGACTGGTTCACCATCGGCAAGACGGTGACCAATGTGG
AGCTGCTGGGCGCGCCGCCCGCCTTCCCGGCAGGGGCGGCCAGGGAGGAGGTGCAGCGCCAGGACGTGGC
CCCCGGCGCTGGTCCCGCGGCCCAGGCTCCGGCTCTGGCCCAAGCTCCGGCCCGGCCGGCCGCTGCGTTC
GAAAGGTCACTCAGCCAAAGGAGCTCAGAAGTAGAGTATATTAACAAATACAGACAGCTCGAAGCACAAG
AGCTTGATGTGTGTCGCAGTGTCCAACCAACCAGTGGGCCAGGTCCAAGGCCATCTTTGGCTAAATTAAG
CAGTGTGACATGCATCCCAGGGACAACTTATAAATATCCTGATTTGCCTATAAGTCGATACAAGGAAGAG
GTTGTGTCTTTGATAGAAAGTAATTCCGTGGTGATTATCCATGGGGCCACGGGAAGCGGTAAAAGCACTC
AGCTCCCGCAGTATATCTTGGACCACTACGTTCAGCGCTCCGCCTACTGCAGCATTGTGGTCACCCAGCC
CCGGAAGATAGGGGCAAGCAGCATCGCCAGGTGGATCAGTAAAGAGCGTGCCTGGACCCTGGGAGGTGTG
GTGGGCTACCAGGTAGGGCTAGAGAAAATAGCAACAGAGGACACCAGGCTAATTTATATGACAACTGGAG
TCCTGCTTCAGAAAATAGTTAGTGCCAAGAGTTTGATGGAATTCACACATATCATCATTGATGAAGTACA
CGAACGAACAGAAGAAATGGATTTCCTGCTATTGGTAGTCCGCAAACTCTTAAGAACAAATTCACGTTTT
GTGAAGGTGGTCCTGATGTCGGCTACCATCAGCTGTAAAGAGTTTGCAGACTACTTTGCTGTTCCTGTTC
AAAACAAGATGAATCCTGCATATATTTTTGAAGTGGAAGGCAAGCCCCATTCAGTTGAAGAGTATTATCT
TAATGATTTGGAGCACATTCATCATAGCAAGCTCTCTCCTCATCTCCTGGAGGAACCGGTGATAACTAAG
GATATATATGAAGTTGCTGTCTCTCTCATTCAGATGTTTGATGACTTGGATATGAAGGAGAGTGGGAACA
AGGCTTGGTCGGGGGCCCAGTTTGTGTTGGAGCGAAGCAGTGTGTTGGTGTTTTTGCCAGGTCTGGGTGA
AATAAATTATATGCATGAACTTCTCACAAGCCTGGTTCATAAAAGGTTGCAGGTCTATCCACTCCATTCA
AGTGTGGCTTTAGAAGAACAGAATAATGTCTTTTTAAGTCCAGTCCCTGGGTACAGAAAGATTATTCTGT
CCACCAATATTGCAGAGAGTTCTGTCACAGTTCCAGATGTCAAATATGTTATAGATTTTTGTTTGACTAG
AACTTTGGTCTGTGATGAAGATACAAATTATCAGAGTCTGCGATTGAGTTGGGCTTCTAAAACCAGCTGT
AATCAGAGAAAAGGCCGTGCTGGACGAGTGTCTAGAGGGTACTGTTACCGGCTGGTACACAAGGATTTCT
GGGACAACTCCATCCCTGATCATGTTGTTCCTGAGATGTTGCGTTGTCCATTAGGAAGCACGATCTTGAA
AGTGAAATTACTTGACATGGGTGAGCCGAGAGCTCTGCTGGCCACTGCCCTTTCCCCGCCTGGTCTGAGT
GACATTGAGCGCACCATCCTTCTACTAAAGGAGGTTGGAGCACTTGCAGTGAGTGGGCAGAGAGAAGATG
AAAACCCCCATGATGGTGAATTGACCTTCTTAGGAAGAGTTTTAGCCCAACTTCCTGTAAATCAGCAACT
TGGTAAACTCATAGTCCTTGGACATGTATTTGGATGTCTAGATGAATGTCTTATTATAGCGGCAGCTCTT
TCTTTGAAGAATTTTTTTGCAATGCCTTTCCGGCAGCATCTCGATGGATATAGGAACAAAGTGAATTTCT
CTGGCAGTAGCAAGAGTGACTGTATTGCACTTGTTGAGGCATTTAAAACATGGAAGGCTTGCAGACAGAC
AGGGGAGCTGCGGTACCCGAAGGATGAACTTAATTGGGGACGGTTAAATTACATTCAAATCAAGAGAATT
AGAGAGGTGGCTGAATTATATGAAGAATTGAAGACTAGAATCTCACAGTTCAACATGCATGTTGATTCTC
GGCGACCTGTCATGGACCAAGAGTATATATATAAGCAGCGATTCATCCTACAGGTTGTATTGGCAGGTGC
TTTCTATCCAAATTACTTTACTTTTGGACAGCCGGATGAGGAGATGGCGGTGAGGGAGCTGGCTGGCAAG
GACCCCAAGACAACTGTCGTGTTGAAACACATTCCTCCCTATGGATTTCTTTACTATAAACAACTACAGT
CTCTCTTTAGACAGTGTGGTCAAGTCAAATCCATTGTATTTGATGGTGCAAAAGCCTTTGTGGAATTCTC
ACGAAATCCAACAGAGAGATTTAAAACCCTTCCTGCAGTATATATGGCAATTAAGATGTCTCAACTAAAA
GTTTCACTTGAACTCAGCGTTCATTCTGCAGAGGAAATTGAAGGGAAGGTGCAAGGCATGAACGTCTCAA
AGCTCAGGAACACAAGGGTGAATGTGGACTTCCAGAAGCAGACGGTAGATCCTATGCAAGTCTCCTTTAA
CACATCAGACAGGTCCCAGACAGTTACAGATCTCCTTCTAACTATTGATGTCACAGAGGTGGTTGAAGTG
GGACACTTTTGGGGATACAGGATTGATGAAAACAACTCAGAGATTCTGAAAAAGCTTACTGCTGAAATCA
ACCAACTGACGCTGGTGCCCTTGCCCACTCACCCACATCCAGACTTGGTCTGTCTGGCACCTTTTGCTGA
TTTTGATAAACAACGCTACTTTAGAGCTCAAGTCCTTTATGTTTCTGGAAATTCTGCTGAGGTATTCTTT
GTAGATTATGGCAATAAGTCTCATGTAGATCTACATCTTTTGATGGAGATTCCCTGTCAATTTCTTGAAC
TTCCTTTCCAGGCTTTGGAATTTAAGATTTGCAAAATGAGACCATCAGCAAAGTCTCTTGTTTGTGGCAA
GCACTGGAGTGACGGGGCCAGCCAGTGGTTCGCCTCTCTGGTGAGCGGCTGCACCCTCCTTGTGAAGGTC
TTCTCTGTGGTGCACAGCGTCCTGCACGTGGATGTGTACCAGTACTCAGGGGTCCAGGATGCCATCAACA
TAAGAGACGTCCTCATCCAGCAGGGCTATGCCGAGCTCACGGAGGAGTCCTACGAGTCCAAGCAAAGCCA
TGAAGTTCTCAAGGGCCTCTTTTCCAAGTCAGTAGAAAACATGACAGATGGCTCTGTGCCCTTTCCCATG
AAAGACGACGAGAAATATCTCATCCGGATTTTGTTAGAGAGCTTTTCTACCAATAAACTGGGTACTCCAA
ACTGTAAGGCAGAACTTCACGGGCCTTTTAACCCTTATGAACTAAAGTGCCATAGTTTGACCAGAATATC
CAAATTCAGGTGTGTTTGGATTGAGAAGGAGAGCATCAACTCTGTCATTATCAGTGACGCCCCTGAAGAC
CTTCACCAGAGAATGCTGGTTGCAGCTTCCCTTTCCATCAATGCGACTGGATCTACGATGCTGCTGAGAG
AAACCTCTCTGATGCCTCATATCCCTGGCCTCCCGGCTCTCCTCAGCATGTTATTCGCACCGGTGATAGA
GTTAAGGATTGATCAGAATGGCAAGTACTATACTGGAGTCCTTTGTGGTTTGGGGTGGAATCCAGCTACA
GGGGCTTCCATACTGCCCGAGCACGACATGGAGCTTGCGTTTGACGTTCAATTCAGCGTGGAGGATGTCG
TCGAGGTTAATATTCTCAGGGCTGCTATTAACAAGCTAGTCTGTGATGGACCAAATGGATGCAAGTGTCT
TGGGCCAGAGAGAGTTGCGCAGCTTCAAGACATTGCCCGTCAGAAGCTTTTAGGTTTGTTCTGTCAGTCA
AAACCAAGGGAGAAGATTGTTCCCAAGTGGCATGAAAAGCCCTACGAGTGGAATCAGGTTGATCCAAAGC
TGGTCATGGAGCAGGCCGACCGTGAGAGCAGCAGAGGGAAGAACACCTTTCTCTACCAGCTCCACAAACT
GGTTGTGCTCGGCACCTGA

Translation (1382 aa):
MLRKLTIEQINDWFTIGKTVTNVELLGAPPAFPAGAAREEVQRQDVAPGAGPAAQAPALAQAPARPAAAF
ERSLSQRSSEVEYINKYRQLEAQELDVCRSVQPTSGPGPRPSLAKLSSVTCIPGTTYKYPDLPISRYKEE
VVSLIESNSVVIIHGATGSGKSTQLPQYILDHYVQRSAYCSIVVTQPRKIGASSIARWISKERAWTLGGV
VGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIIIDEVHERTEEMDFLLLVVRKLLRTNSRF
VKVVLMSATISCKEFADYFAVPVQNKMNPAYIFEVEGKPHSVEEYYLNDLEHIHHSKLSPHLLEEPVITK
DIYEVAVSLIQMFDDLDMKESGNKAWSGAQFVLERSSVLVFLPGLGEINYMHELLTSLVHKRLQVYPLHS
SVALEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSC
NQRKGRAGRVSRGYCYRLVHKDFWDNSIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPGLS
DIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAAL
SLKNFFAMPFRQHLDGYRNKVNFSGSSKSDCIALVEAFKTWKACRQTGELRYPKDELNWGRLNYIQIKRI
REVAELYEELKTRISQFNMHVDSRRPVMDQEYIYKQRFILQVVLAGAFYPNYFTFGQPDEEMAVRELAGK
DPKTTVVLKHIPPYGFLYYKQLQSLFRQCGQVKSIVFDGAKAFVEFSRNPTERFKTLPAVYMAIKMSQLK
VSLELSVHSAEEIEGKVQGMNVSKLRNTRVNVDFQKQTVDPMQVSFNTSDRSQTVTDLLLTIDVTEVVEV
GHFWGYRIDENNSEILKKLTAEINQLTLVPLPTHPHPDLVCLAPFADFDKQRYFRAQVLYVSGNSAEVFF
VDYGNKSHVDLHLLMEIPCQFLELPFQALEFKICKMRPSAKSLVCGKHWSDGASQWFASLVSGCTLLVKV
FSVVHSVLHVDVYQYSGVQDAINIRDVLIQQGYAELTEESYESKQSHEVLKGLFSKSVENMTDGSVPFPM
KDDEKYLIRILLESFSTNKLGTPNCKAELHGPFNPYELKCHSLTRISKFRCVWIEKESINSVIISDAPED
LHQRMLVAASLSINATGSTMLLRETSLMPHIPGLPALLSMLFAPVIELRIDQNGKYYTGVLCGLGWNPAT
GASILPEHDMELAFDVQFSVEDVVEVNILRAAINKLVCDGPNGCKCLGPERVAQLQDIARQKLLGLFCQS
KPREKIVPKWHEKPYEWNQVDPKLVMEQADRESSRGKNTFLYQLHKLVVLGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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