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Report for CCDS994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
994.1 Public Homo sapiens 1 RFX5 24 110 108 CCDS HistoryNCBI Gene:5993Re-query CCDS DB by CCDS ID:994.1Re-query CCDS DB by GeneID:5993See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290524.8 ENSP00000290524.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290524.8Link to Ensembl Protein Viewer:ENSP00000290524.4Re-query CCDS DB by Nucleotide ID:ENST00000290524Re-query CCDS DB by Protein ID:ENSP00000290524
Original member Current member EBI ENST00000368870.6 ENSP00000357864.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368870.6Link to Ensembl Protein Viewer:ENSP00000357864.2Re-query CCDS DB by Nucleotide ID:ENST00000368870Re-query CCDS DB by Protein ID:ENSP00000357864
Original member Current member EBI ENST00000452671.7 ENSP00000389130.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452671.7Link to Ensembl Protein Viewer:ENSP00000389130.2Re-query CCDS DB by Nucleotide ID:ENST00000452671Re-query CCDS DB by Protein ID:ENSP00000389130
Original member Current member NCBI NM_000449.4 NP_000440.1 Accepted alive Link to Nucleotide Sequence:NM_000449.4Link to Protein Sequence:NP_000440.1Re-query CCDS DB by Nucleotide ID:NM_000449Re-query CCDS DB by Protein ID:NP_000440Link to BLAST:NP_000440.1
Original member Current member NCBI NM_001025603.2 NP_001020774.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001025603.2Link to Protein Sequence:NP_001020774.1Re-query CCDS DB by Nucleotide ID:NM_001025603Re-query CCDS DB by Protein ID:NP_001020774Link to BLAST:NP_001020774.1
Original member Current member NCBI NM_001379412.1 NP_001366341.1 Accepted alive Link to Nucleotide Sequence:NM_001379412.1Link to Protein Sequence:NP_001366341.1Re-query CCDS DB by Nucleotide ID:NM_001379412Re-query CCDS DB by Protein ID:NP_001366341Link to BLAST:NP_001366341.1
Original member Current member NCBI NM_001379413.1 NP_001366342.1 Accepted alive Link to Nucleotide Sequence:NM_001379413.1Link to Protein Sequence:NP_001366342.1Re-query CCDS DB by Nucleotide ID:NM_001379413Re-query CCDS DB by Protein ID:NP_001366342Link to BLAST:NP_001366342.1
Original member Current member NCBI NM_001379414.1 NP_001366343.1 Accepted alive Link to Nucleotide Sequence:NM_001379414.1Link to Protein Sequence:NP_001366343.1Re-query CCDS DB by Nucleotide ID:NM_001379414Re-query CCDS DB by Protein ID:NP_001366343Link to BLAST:NP_001366343.1
Original member Current member NCBI NM_001379415.1 NP_001366344.1 Accepted alive Link to Nucleotide Sequence:NM_001379415.1Link to Protein Sequence:NP_001366344.1Re-query CCDS DB by Nucleotide ID:NM_001379415Re-query CCDS DB by Protein ID:NP_001366344Link to BLAST:NP_001366344.1
Original member Current member NCBI NM_001379416.1 NP_001366345.1 Accepted alive Link to Nucleotide Sequence:NM_001379416.1Link to Protein Sequence:NP_001366345.1Re-query CCDS DB by Nucleotide ID:NM_001379416Re-query CCDS DB by Protein ID:NP_001366345Link to BLAST:NP_001366345.1
Original member Current member NCBI NM_001379417.1 NP_001366346.1 Accepted alive Link to Nucleotide Sequence:NM_001379417.1Link to Protein Sequence:NP_001366346.1Re-query CCDS DB by Nucleotide ID:NM_001379417Re-query CCDS DB by Protein ID:NP_001366346Link to BLAST:NP_001366346.1
Original member Current member NCBI NM_001379418.1 NP_001366347.1 Accepted alive Link to Nucleotide Sequence:NM_001379418.1Link to Protein Sequence:NP_001366347.1Re-query CCDS DB by Nucleotide ID:NM_001379418Re-query CCDS DB by Protein ID:NP_001366347Link to BLAST:NP_001366347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000440.1 616 P48382-1 616 100% 0 0
NP_001020774.1 616 P48382-1 616 100% 0 0
NP_001366341.1 616 P48382-1 616 100% 0 0
NP_001366342.1 616 P48382-1 616 100% 0 0
NP_001366343.1 616 P48382-1 616 100% 0 0
NP_001366344.1 616 P48382-1 616 100% 0 0
NP_001366345.1 616 P48382-1 616 100% 0 0
NP_001366346.1 616 P48382-1 616 100% 0 0
NP_001366347.1 616 P48382-1 616 100% 0 0

Chromosomal Locations for CCDS 994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151342186 151343178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151343342 151343442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151343681 151343882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151344197 151344278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151344417 151344536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151344728 151344847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151345106 151345188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151345928 151345961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151346205 151346320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGGCAGAAGATGAGCCTGATGCTAAGAGCCCCAAGACTGGGGGAAGGGCCCCCCCAGGTGGTGCTGAGG
CTGGGGAACCTACCACCCTTCTTCAGAGGCTCCGAGGTACCATTTCCAAGGCCGTGCAGAACAAAGTAGA
GGGGATCCTGCAAGATGTACAGAAATTTTCTGACAATGACAAGCTGTATCTCTACCTTCAGCTCCCCTCA
GGACCCACCACTGGAGACAAAAGCTCAGAGCCAAGTACACTGAGCAATGAGGAGTACATGTATGCCTATA
GGTGGATCCGCAACCACCTGGAAGAGCACACTGACACCTGTCTGCCAAAGCAAAGTGTTTATGATGCCTA
TCGGAAGTACTGTGAGAGTCTTGCCTGTTGCCGCCCACTCAGCACAGCCAACTTTGGCAAGATCATCAGA
GAGATCTTCCCTGACATCAAAGCTCGAAGGCTTGGTGGCCGGGGCCAGTCCAAATATTGCTACAGTGGCA
TAAGGAGGAAGACCTTGGTGTCTATGCCACCCCTGCCTGGACTTGACCTAAAGGGTTCTGAGAGTCCAGA
AATGGGCCCAGAAGTAACCCCAGCACCTCGAGATGAACTGGTGGAGGCAGCGTGTGCCCTGACCTGTGAC
TGGGCAGAGCGGATCCTGAAACGGTCCTTCAGTTCCATCGTTGAGGTCGCCCGCTTCCTGCTACAGCAGC
ATCTCATCTCTGCCCGATCTGCACATGCCCATGTGCTTAAGGCCATGGGGCTCGCTGAAGAGGACGAACA
TGCACCTCGGGAACGGTCATCTAAACCAAAGAATGGTTTAGAGAACCCAGAGGGTGGAGCCCACAAGAAG
CCAGAGAGACTGGCCCAGCCTCCTAAGGATCTGGAAGCCCGAACTGGGGCCGGTCCTCTCGCACGTGGAG
AGCGGAAGAAGAGTGTAGTTGAGAGCTCGGCCCCAGGAGCCAATAACCTGCAGGTTAATGCCCTAGTGGC
TCGGCTGCCTCTGCTCCTTCCCCGGGCCCCTCGCTCACTAATTCCGCCAATCCCAGTCTCTCCACCTATT
CTGGCCCCCAGGCTTTCTTCAGGTGCCCTGAAAGTGGCTACACTGCCTCTGTCTAGTAGGGCCGGGGCAC
CCCCAGCAGCTGTGCCCATCATTAACATGATCTTACCAACTGTTCCTGCTTTGCCTGGACCTGGACCTGG
GCCTGGGCGAGCTCCACCTGGGGGACTCACTCAGCCCCGGGGCACAGAGAACAGAGAGGTAGGCATAGGT
GGTGACCAAGGACCACATGACAAGGGTGTCAAGAGGACAGCTGAAGTACCTGTGAGTGAGGCCAGTGGGC
AGGCTCCACCAGCTAAAGCAGCAAAGCAGGATATAGAGGATACAGCAAGTGATGCCAAAAGGAAACGGGG
GCGCCCTCGAAAAAAGTCAGGTGGAAGTGGGGAAAGGAATTCTACCCCTCTCAAGTCAGCAGCTGCCATG
GAATCTGCCCAGTCCTCAAGGTTACCATGGGAGACATGGGGCTCAGGAGGGGAAGGCAACTCAGCTGGAG
GGGCAGAGAGGCCAGGGCCAATGGGAGAGGCTGAAAAGGGGGCAGTACTTGCCCAGGGTCAGGGAGATGG
TACTGTTTCCAAAGGAGGAAGGGGCCCCGGTTCCCAGCATACCAAAGAAGCAGAAGATAAAATTCCCTTG
GTCCCCTCAAAAGTGAGTGTCATCAAGGGCAGCAGAAGCCAAAAGGAGGCTTTTCCTTTGGCAAAGGGAG
AGGTAGACACTGCACCACAGGGTAATAAAGACTTAAAGGAGCATGTGCTTCAAAGTTCCTTATCCCAGGA
GCATAAAGACCCAAAAGCAACACCCCCATGA

Translation (616 aa):
MAEDEPDAKSPKTGGRAPPGGAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDNDKLYLYLQLPS
GPTTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIR
EIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCD
WAERILKRSFSSIVEVARFLLQQHLISARSAHAHVLKAMGLAEEDEHAPRERSSKPKNGLENPEGGAHKK
PERLAQPPKDLEARTGAGPLARGERKKSVVESSAPGANNLQVNALVARLPLLLPRAPRSLIPPIPVSPPI
LAPRLSSGALKVATLPLSSRAGAPPAAVPIINMILPTVPALPGPGPGPGRAPPGGLTQPRGTENREVGIG
GDQGPHDKGVKRTAEVPVSEASGQAPPAKAAKQDIEDTASDAKRKRGRPRKKSGGSGERNSTPLKSAAAM
ESAQSSRLPWETWGSGGEGNSAGGAERPGPMGEAEKGAVLAQGQGDGTVSKGGRGPGSQHTKEAEDKIPL
VPSKVSVIKGSRSQKEAFPLAKGEVDTAPQGNKDLKEHVLQSSLSQEHKDPKATPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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