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Report for CCDS94571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94571.1 Public Homo sapiens X SH3KBP1 24 110 108 CCDS HistoryNCBI Gene:30011Re-query CCDS DB by CCDS ID:94571.1Re-query CCDS DB by GeneID:30011See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000699673.1 ENSP00000514516.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699673.1Link to Ensembl Protein Viewer:ENSP00000514516.1Re-query CCDS DB by Nucleotide ID:ENST00000699673Re-query CCDS DB by Protein ID:ENSP00000514516
Original member Current member NCBI NM_001353890.2 NP_001340819.1 Accepted alive Link to Nucleotide Sequence:NM_001353890.2Link to Protein Sequence:NP_001340819.1Re-query CCDS DB by Nucleotide ID:NM_001353890Re-query CCDS DB by Protein ID:NP_001340819Link to BLAST:NP_001340819.1

Chromosomal Locations for CCDS 94571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 19536417 19536458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19537717 19537780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19541925 19542193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19549974 19550083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19569103 19569188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19588643 19588802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19592067 19592147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19594949 19595000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19607938 19608045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19631864 19631958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19645400 19645475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19683823 19684028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19695612 19695741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19706881 19706984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19746318 19746441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19836125 19836282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19887307 19887310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGTGGAGGCCATAGTGGAGTTTGACTACCAGGCCCAGCACGATGATGAGCTGACGATCAGCGTGGGTG
AAATCATCACCAACATCAGGAAGGAGGATGGAGGCTGGTGGGAGGGACAGATCAACGGCAGGAGAGGTTT
GTTCCCTGACAACTTTGTAAGAGAAATAAAGAAAGAGATGAAGAAAGACCCTCTCACCAACAAAGCTCCA
GAAAAGCCCCTGCACGAAGTGCCCAGTGGAAACTCTTTGCTGTCTTCTGAAACGATTTTAAGAACCAATA
AGAGAGGCGAGCGACGGAGGCGCCGGTGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAACT
TGAGCTGAAAGTTGGCGACATCATAGAGGTGGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTTCTC
AACGGGAAGACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCA
TTTCCCAGGATGAGCAGCTATCCAAGTCAAGTTTAAGGGAAACCACAGGCTCCGAGAGTGATGGGGGTGA
CTCAAGCAGCACCAAGTCTGAAGGTGCCAACGGGACAGTGGCAACTGCAGCAATCCAGCCCAAGAAAGTT
AAGGGAGTGGGCTTTGGAGACATTTTCAAAGACAAGCCAATCAAACTAAGACCAAGGTCAATTGAAGTAG
AAAATGACTTTCTGCCGGTAGAAAAGACTATTGGGAAGAAGTTACCTGCAACTACAGCAACTCCAGACTC
ATCAAAAACAGAAATGGACAGCAGGACAAAGAGCAAGGATTACTGCAAAGTAATATTTCCATATGAGGCA
CAGAATGATGATGAATTGACAATCAAAGAAGGAGATATAGTCACTCTCATCAATAAGGACTGCATCGACG
TAGGCTGGTGGGAAGGAGAGCTGAACGGCAGACGAGGCGTGTTCCCCGATAACTTCGTGAAGTTACTTCC
ACCGGACTTTGAAAAGGAAGGGAATAGACCCAAGAAGCCACCGCCTCCATCCGCTCCTGTCATCAAACAA
GGGGCAGGCACCACTGAGAGAAAACATGAAATTAAAAAGATACCTCCTGAAAGACCAGAAATGCTTCCAA
ACAGAACAGAAGAAAAAGAAAGACCAGAGAGAGAGCCAAAACTGGATTTACAGAAGCCCTCCGTTCCTGC
CATACCGCCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTCAGCAGACCTGGCGCACTGCCCCCGAGA
AGGCCGGAGAGACCGGTGGGTCCGCTGACACACACCAGGGGTGACAGTCCAAAGATTGACTTGGCCGGCA
GTTCGCTATCTGGCATCCTGGACAAAGATCTCTCGGACCGCAGCAATGACATTGACTTAGAAGGTTTTGA
CTCCGTGGTATCATCTACTGAGAAACTCAGTCATCCGACCACAAGCAGACCAAAAGCTACAGGGAGGCGG
CCTCCGTCCCAGTCCCTCACATCTGTGTCTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGG
CAGCAGGTGGCGGTGGGCCAGCCCCTCTGTCCTCAGCGGCGCCCTCCCCCCTGTCATCCTCTTTGGGAAC
AGCTGGACACAGAGCCAACTCCCCGTCTCTGTTCGGCACGGAAGGAAAACCAAAGATGGAGCCTGCGGCC
AGCAGCCAGGCGGCCGTGGAGGAGCTAAGGACACAGGTCCGCGAGCTGAGGAGCATCATCGAGACCATGA
AGGACCAGCAGAAACGAGAGATTAAACAGTTATTGTCTGAGTTGGATGAAGAGAAGAAAATCCGGCTTCG
GTTGCAGATGGAAGTGAACGACATAAAGAAAGCTCTACAATCAAAATGA

Translation (622 aa):
MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLTNKAP
EKPLHEVPSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL
NGKTGMFPSNFIKELSGESDELGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKV
KGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPATTATPDSSKTEMDSRTKSKDYCKVIFPYEA
QNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPSAPVIKQ
GAGTTERKHEIKKIPPERPEMLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPR
RPERPVGPLTHTRGDSPKIDLAGSSLSGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRR
PPSQSLTSVSDNKASLPPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHRANSPSLFGTEGKPKMEPAA
SSQAAVEELRTQVRELRSIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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