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Report for CCDS93939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93939.1 Public Homo sapiens 6 ZC3H11C 24 110 108 CCDS HistoryNCBI Gene:441155Re-query CCDS DB by CCDS ID:93939.1Re-query CCDS DB by GeneID:441155See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398578.3 ENSP00000513306.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398578.3Link to Ensembl Protein Viewer:ENSP00000513306.1Re-query CCDS DB by Nucleotide ID:ENST00000398578Re-query CCDS DB by Protein ID:ENSP00000513306
Original member Current member NCBI NM_001271675.2 NP_001258604.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271675.2Link to Protein Sequence:NP_001258604.1Re-query CCDS DB by Nucleotide ID:NM_001271675Re-query CCDS DB by Protein ID:NP_001258604Link to BLAST:NP_001258604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258604.1 805 P0DQW0 805 100% 0 0

Chromosomal Locations for CCDS 93939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 65302522 65304939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGCCTAATCAAGGAGAAGACTGCTATTTTTTTTTCTATTCTACATGTACCAAAGGTGACAGCTGCCCAT
TCCGTCACTGTGAAGCTGCACTAGGCAATGAAACTGTTTGCACATTATGGCAAGAAGGGCGCTGTTTTCG
ACGGGTGTGCAGGTTTCGGCACATGGAGATTGATAAAAAACGCAGTGAAATTCCTTGTTATTGGGAAAAT
CAGCCAACAGGATGTCAAAAATTAAACTGCGCTTTCCATCACAATAGAGGACGATATGTTGATGGCCTTT
TCCTACCTCCGAGCAAAAGTGTGTTGCCCACTGTGCCTGAGTCACCAGAAGAGGAAGTGAAGGCTAGCCA
ACTTTCAGTTCAGCAGAACAAATTGTCTGTCCAGTCCAATCCTTCCCCTCAGCTGCGGAGCGTTATGAAA
GTAGAAAGTTCCGAAAATGTTCCTAGCCCCAAGCATCCACCAGTTGTAATTAATGCTGCAGATGATGATG
AAGATGATGATGATCAGTTTTCTGAGGAAGGTGATGAAACCAAAACACCTACCCTGCAACCAACTCCTGA
AGTTCACAATGGATTACGAGTGACTTCTGTCCGGAAACCTGCAGTCAATATAAAGCAAGGTGAATGTTTG
CATTTTGGAATAAAAACTCTTGAGGAAATTAAGTCAAAGAAAATGAAGGAAAAATCTGAGGAGCAAGGTG
AGGGTTCTTCAGGAGTTTCCAGTCTTTTACTCCACCCTGAGCCTGTTCCAGGTCCTGAAAAAGAAAATGT
CAGGACTGTGGTGAGGACAGTAACTCTCTCCACCAAACAAGGAGAAGAACCCTTGGTTAGATTGGGCCTT
ACTGAGACACTGGGGAAACGAAAATTTTCGACAGGCGGTGACAGTGATCCTCCATTAAAGCGCAGCCTGG
CACAGAGGCTAGGGAAGAAAGTTGAAGCTCCAGAAACTAACACTGACGAAACACCAAAGAAAGCTCAAGT
TTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCTGATCCAAATAATGAGGACGCAACAGATAAAGTT
AATAAAGTTGGTGAGATCCATGTGAAGACATTAGAAGAAATGCTTCTTGAAAGAGCCAGTCAGAAACATG
GGGAATCGCAAACTAAACTCAAGACAGAAGGACCTTCAAAAACTGATGATTCTACTTCAGGAGCAAGAAG
CTCCTCCACTATCCGTATCAAAACCTTCTCTGAGGTCCTGGCTGAAGAAGAACATAGGCAGCAGGAAGCA
GAGAGACAAAAAAGCAAAAAGGATACAACTTGCATCAAGCTAAAGACTGATAGTGAAATTAAAAAAACAG
TAGTTTTGCCACCCATTGTTGCCAGCAAAGGACAATCAGAGGAGCCTGCAGGTAAAACAAAGTCCATGCA
GGAGGTGCACATGAAGACGGTGGAAGAAATTAAACTGGAGAAGGCACTGAGGGTGCAGCAGAGCTCTGAG
AGCAGCACCAGCTCCCCGTCTCAACATGAGGCCACTCCAGGGGCAAGGTTGCTACTGCGAATCACCAAAA
GAACATGGAGGAAAGAAGAGAAGAAACTTCAGGAAGGAAATGAAGTTGATTTTCTGAGCCGTGTTAGAAT
GGAAGCTACAGAGGCTTCAGTTGAGACCACAGGAGTTGACATCACTAAAATTCAAGTCAAGAGATGTGAG
ATCATGAGAGAGACGCGCATGCAGAAACAGCAGGAGAGGGAAAAATCAGTCTTGACACCTCTTCAGGGAG
ATGTAGCCTCTTGCAATACCCAAGTGGCAGAGAAACCAGTGCTCACTGCTGTGCCAGGAATCACATGGCA
CCTGACCAAGCAGCTTCCCACAAAGTCATCCCAGAAGGTGGAGGTAGAAACCTCAGGGATTGCAGACTCA
TTATTGAATGTGAAATGGTCAGCACAGACCTTGGAAAAAAGGGGTGAAGCTAAACCCACAGTGAACGTGA
AGCAATCTGTGGTTAAAGTTGTGTCATCCCCCAAATTGGCCCCAAAACGTAAGGCAGTGGAGATGCACCC
TGCTGTCACTGCCGCTGTGAAGCCACTCAGCTCCAGCAGCGTCCTACAGGAACCCCCAGCCAAAAAGGCA
GCTGTGGATGCTGTTGTCCTGCTTGTCTCTGAGGACAAATCAGTCACTGTGCCTGAAACAGAAAATCCTA
GAGACAGTCTTGTGCTGCCTCTAACCCAGTCCTCTTCAGATTCCTCACCCCCGGAGGTGTCTGGCCCTTC
CTCATCCCAAATGAGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAAGCCCCCACTCTCTGTG
GAGGATGATTTTGAGAAACTAACATGGGAGATTTCAGGAGGCAAATTGGAAGCTGAGATTGACCTGGATC
CTGGGAAAGATGAAGATGACCTTCCGCTTGAGCTATGA

Translation (805 aa):
MPNQGEDCYFFFYSTCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRRVCRFRHMEIDKKRSEIPCYWEN
QPTGCQKLNCAFHHNRGRYVDGLFLPPSKSVLPTVPESPEEEVKASQLSVQQNKLSVQSNPSPQLRSVMK
VESSENVPSPKHPPVVINAADDDEDDDDQFSEEGDETKTPTLQPTPEVHNGLRVTSVRKPAVNIKQGECL
HFGIKTLEEIKSKKMKEKSEEQGEGSSGVSSLLLHPEPVPGPEKENVRTVVRTVTLSTKQGEEPLVRLGL
TETLGKRKFSTGGDSDPPLKRSLAQRLGKKVEAPETNTDETPKKAQVSKSLKERLGMSADPNNEDATDKV
NKVGEIHVKTLEEMLLERASQKHGESQTKLKTEGPSKTDDSTSGARSSSTIRIKTFSEVLAEEEHRQQEA
ERQKSKKDTTCIKLKTDSEIKKTVVLPPIVASKGQSEEPAGKTKSMQEVHMKTVEEIKLEKALRVQQSSE
SSTSSPSQHEATPGARLLLRITKRTWRKEEKKLQEGNEVDFLSRVRMEATEASVETTGVDITKIQVKRCE
IMRETRMQKQQEREKSVLTPLQGDVASCNTQVAEKPVLTAVPGITWHLTKQLPTKSSQKVEVETSGIADS
LLNVKWSAQTLEKRGEAKPTVNVKQSVVKVVSSPKLAPKRKAVEMHPAVTAAVKPLSSSSVLQEPPAKKA
AVDAVVLLVSEDKSVTVPETENPRDSLVLPLTQSSSDSSPPEVSGPSSSQMSMKTRRLSSASTGKPPLSV
EDDFEKLTWEISGGKLEAEIDLDPGKDEDDLPLEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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