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Report for CCDS93854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93854.1 Public Homo sapiens 6 SLC35B3 24 110 108 CCDS HistoryNCBI Gene:51000Re-query CCDS DB by CCDS ID:93854.1Re-query CCDS DB by GeneID:51000See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 93854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000648987.1 ENSP00000498054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648987.1Link to Ensembl Protein Viewer:ENSP00000498054.1Re-query CCDS DB by Nucleotide ID:ENST00000648987Re-query CCDS DB by Protein ID:ENSP00000498054
Original member Current member NCBI NM_001370478.2 NP_001357407.2 Accepted alive Link to Nucleotide Sequence:NM_001370478.2Link to Protein Sequence:NP_001357407.2Re-query CCDS DB by Nucleotide ID:NM_001370478Re-query CCDS DB by Protein ID:NP_001357407Link to BLAST:NP_001357407.2
Original member NCBI NM_001370479.1 NP_001357408.1 Updated not alive Link to Nucleotide Sequence:NM_001370479.1Link to Protein Sequence:NP_001357408.1Re-query CCDS DB by Nucleotide ID:NM_001370479Re-query CCDS DB by Protein ID:NP_001357408
Current member NCBI NM_001370479.2 NP_001357408.1 Accepted alive Link to Nucleotide Sequence:NM_001370479.2Link to Protein Sequence:NP_001357408.1Re-query CCDS DB by Nucleotide ID:NM_001370479Re-query CCDS DB by Protein ID:NP_001357408Link to BLAST:NP_001357408.1

Chromosomal Locations for CCDS 93854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8413549 8413699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8414908 8414977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8416884 8416995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8417402 8417494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8419580 8419677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8420721 8420828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8422470 8422624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8427937 8428058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8429864 8430064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGATCTCAAGTTCAACAATTCCAGGAAATATATTTCTATCACTGTGCCATCCAAAACCCAAACAATGT
CACCACACATCAAGTCAGTTGACGACGTTGTGGTACTTGGCATGAATCTCAGCAAGTTTAACAAACTTAC
TCAGTTTTTCATATGTGTTGCTGGAGTTTTTGTATTTTACCTAATTTATGGGTATTTACAGGAATTAATA
TTTTCAGTGGAGGGTTTTAAGTCCTGTGGCTGGTACCTTACCTTAGTGCAGTTTGCCTTTTACTCCATAT
TTGGCCTAATAGAACTTCAGCTTATTCAGGACAAAAGGAGGAGAATACCAGGAAAAACCTACATGATAAT
AGCTTTTCTAACTGTGGGTACTATGGGGTTATCAAACACTTCCTTGGGCTACCTGAATTACCCTACCCAA
GTCATCTTCAAGTGCTGCAAATTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAAGCGTTATA
ATGTTGCAGATGTGTCTGCTGCCATATGTATGAGCCTTGGCCTGATATGGTTTACCCTCGCTGACAGCAC
AACTGCACCAAATTTCAACCTGACGGGTGTGGTGCTTATTTCCCTGGCACTATGTGCAGATGCCGTCATT
GGAAATGTTCAAGAGAAAGCTATGAAACTTCATAATGCTTCTAATTCTGAAATGGTATTGTATTCGTATT
CAATTGGTTTTGTATACATTTTACTGGGATTGACATGCACTAGTGGATTAGGCCCTGCAGTAACATTTTG
TGCAAAGAATCCAGTTCGGACCTATGGTTATGCGTTCCTTTTTTCCCTCACTGGATATTTTGGAATCTCC
TTTGTTCTGGCTTTGATTAAAATTTTTGGTGCACTTATTGCTGTAACAGTGACAACAGGAAGAAAAGCAA
TGACCATTGTACTTTCGTTTATATTCTTTGCTAAACCATTCACGTTTCAGTATGTATGGTCTGGTTTGTT
AGTTGTCCTTGGTATATTTCTTAATGTTTACAGCAAAAATATGGATAAAATAAGACTACCATCACTGTAT
GATTTGATAAACAAATCAGTGGAAGCAAGAAAGTCAAGGACGCTGGCACAGACTGTATAG

Translation (369 aa):
MDLKFNNSRKYISITVPSKTQTMSPHIKSVDDVVVLGMNLSKFNKLTQFFICVAGVFVFYLIYGYLQELI
FSVEGFKSCGWYLTLVQFAFYSIFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQ
VIFKCCKLIPVMLGGVFIQGKRYNVADVSAAICMSLGLIWFTLADSTTAPNFNLTGVVLISLALCADAVI
GNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGIS
FVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIRLPSLY
DLINKSVEARKSRTLAQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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