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Report for CCDS93843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93843.1 Public Homo sapiens 5 TRIM52 24 110 108 CCDS HistoryNCBI Gene:84851Re-query CCDS DB by CCDS ID:93843.1Re-query CCDS DB by GeneID:84851See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93843.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000685507.1 ENSP00000509812.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685507.1Link to Ensembl Protein Viewer:ENSP00000509812.1Re-query CCDS DB by Nucleotide ID:ENST00000685507Re-query CCDS DB by Protein ID:ENSP00000509812
Original member Current member NCBI NM_001346049.2 NP_001332978.1 Accepted alive Link to Nucleotide Sequence:NM_001346049.2Link to Protein Sequence:NP_001332978.1Re-query CCDS DB by Nucleotide ID:NM_001346049Re-query CCDS DB by Protein ID:NP_001332978Link to BLAST:NP_001332978.1

Chromosomal Locations for CCDS 93843.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181256471 181256515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181260001 181260813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCTGGTTATGCCACTACTCCCAGCCCCATGCAGACCCTTCAGGAGGAAGCGGTGTGTGCCATCTGCT
TGGATTACTTCAAGGACCCCGTGTCCATCAGCTGTGGGCACAACTTCTGCCGAGGGTGTGTGACCCAGCT
GTGGAGTAAGGAGGACGAGGAGGACCAGAACGAGGAGGAAGATGAATGGGAGGAGGAGGAGGACGAGGAA
GCGGTGGGGGCCATGGATGGATGGGACGGCTCCATTCGAGAGGTGTTGTATCGGGGGAATGCTGACGAAG
AGTTGTTCCAAGACCAAGATGACGATGAACTCTGGCTCGGTGACAGTGGTATAACTAATTGGGACAACGT
AGACTATATGTGGGACGAGGAGGAAGAAGAAGAAGAGGAAGATCAGGACTATTACCTAGGAGGCTTGAGA
CCTGACCTGAGAATTGATGTCTACCGAGAAGAAGAAATACTGGAAGCATACGATGAGGACGAAGATGAAG
AGCTGTATCCTGACATCCACCCGCCTCCTTCCTTGCCCCTTCCAGGGCAGTTCACCTGCCCCCAGTGCCG
AAAGAGCTTTACACGTCGCAGCTTTCGTCCCAACTTGCAGCTGGCCAACATGGTCCAGATAATTCGCCAG
ATGTGCCCCACTCCTTATCGGGGAAACCGGAGTAATGATCAGGGCATGTGCTTTAAACACCAGGAAGCCC
TGAAACTCTTCTGTGAGGTGGACAAAGAGGCCATCTGTGTGGTGTGCCGAGAATCCAGGAGCCACAAACA
GCACAGCGTGCTGCCTTTGGAGGAGGTGGTGCAGGAGTACCAGATCTTAAAAAACATCAGCTCGCAAGAG
GCTGAGGCAGGAGAATGA

Translation (285 aa):
MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEEDEWEEEEDEE
AVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYMWDEEEEEEEEDQDYYLGGLR
PDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQ
MCPTPYRGNRSNDQGMCFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQILKNISSQE
AEAGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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