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Report for CCDS93787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93787.1 Public Homo sapiens 5 TRPC7 24 110 108 CCDS HistoryNCBI Gene:57113Re-query CCDS DB by CCDS ID:93787.1Re-query CCDS DB by GeneID:57113See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502753.4 ENSP00000424854.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502753.4Link to Ensembl Protein Viewer:ENSP00000424854.3Re-query CCDS DB by Nucleotide ID:ENST00000502753Re-query CCDS DB by Protein ID:ENSP00000424854
Original member Current member NCBI NM_001376901.1 NP_001363830.1 Accepted alive Link to Nucleotide Sequence:NM_001376901.1Link to Protein Sequence:NP_001363830.1Re-query CCDS DB by Nucleotide ID:NM_001376901Re-query CCDS DB by Protein ID:NP_001363830Link to BLAST:NP_001363830.1

Chromosomal Locations for CCDS 93787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136213435 136213604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136216200 136216275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136225274 136225354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136226034 136226255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136231354 136231549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136247471 136247735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136251649 136251882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136266220 136266436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136315597 136315779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136356608 136357385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136365253 136365254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGTTGAGGAACAGCACCTTCAAAAACATGCAGCGCCGGCACACAACGCTGAGGGAGAAGGGCCGTCGCC
AGGCCATCCGGGGTCCCGCCTACATGTTCAACGAGAAGGGCACCAGTCTGACGCCCGAGGAGGAGCGCTT
CCTGGACTCGGCTGAGTATGGCAACATCCCGGTGGTCCGGAAAATGCTGGAGGAGTCCAAGACCCTTAAC
TTCAACTGTGTGGACTACATGGGGCAGAACGCTCTGCAGCTGGCCGTGGGCAACGAGCACCTAGAGGTCA
CGGAGCTGCTGCTGAAGAAGGAGAACCTGGCACGGGTGGGGGACGCGCTGCTGCTGGCCATCAGCAAGGG
CTATGTGCGCATCGTGGAGGCCATCCTCAACCACCCGGCCTTCGCGCAGGGCCAGCGCCTGACGCTCAGC
CCGCTGGAACAGGAGCTGCGCGACGACGACTTCTATGCCTACGACGAGGACGGCACGCGCTTCTCCCACG
ACATCACGCCCATCATCCTGGCGGCGCACTGCCAGGAGTATGAGATCGTGCACATCCTGCTGCTCAAGGG
CGCCCGCATCGAGCGGCCCCACGACTACTTCTGCAAGTGCAATGAGTGCACCGAGAAACAGCGGAAAGAC
TCCTTCAGCCACTCGCGCTCGCGCATGAACGCCTACAAAGGACTGGCGAGTGCTGCCTACTTGTCCCTGT
CCAGCGAAGACCCTGTCCTCACCGCCCTGGAGCTCAGCAACGAGTTAGCCAGACTAGCCAACATTGAGAC
TGAATTTAAGAACGATTACAGGAAGTTATCTATGCAATGCAAGGATTTTGTAGTGGGCGTGCTGGACCTG
TGCCGAGACACAGAAGAGGTGGAAGCAATTTTAAACGGTGATGTGAACTTCCAAGTCTGGTCCGACCACC
ACCGTCCAAGTCTGAGCCGGATCAAACTCGCCATTAAATATGAAGTCAAGAAGCTAGGACGAACCCTGAG
GAGCCCTTTCATGAAGTTTGTAGCTCATGCAGTTTCTTTTACAATCTTCTTGGGATTATTAGTTGTGAAT
GCATCTGACCGATTTGAAGGTGTTAAAACCCTGCCAAACGAAACCTTCACAGACTACCCAAAACAAATCT
TCAGAGTGAAAACCACACAGTTCTCCTGGACAGAAATGCTCATTATGAAGTGGGTCTTAGGAATGATTTG
GTCCGAATGCAAGGAAATCTGGGAGGAGGGGCCACGGGAGTACGTGCTGCACTTGTGGAACCTGCTAGAT
TTCGGGATGCTGTCCATCTTCGTGGCCTCCTTCACAGCACGCTTCATGGCCTTCCTGAAGGCCACGGAGG
CACAGCTGTACGTGGACCAGCACGTGCAGGACGACACGCTGCACAATGTCTCGCTTCCGCCGGAAGTGGC
ATACTTCACCTACGCCAGGGACAAGTGGTGGCCTTCAGACCCTCAGATCATATCGGAAGGGCTCTACGCG
ATAGCCGTCGTGCTGAGCTTCTCTCGCATTGCATACATTCTGCCAGCCAACGAGAGTTTTGGGCCCCTGC
AGATCTCGCTAGGGAGAACTGTGAAAGATATCTTCAAGTTCATGGTCATTTTCATCATGGTATTTGTGGC
CTTCATGATTGGGATGTTCAACCTGTACTCTTACTACCGAGGTGCCAAATACAACCCAGCGTTTACAACG
GTTGAAGAAAGTTTTAAAACTTTGTTTTGGTCCATATTCGGCTTATCTGAAGTAATCTCAGTGGTGCTGA
AATACGACCACAAATTCATCGAGAACATTGGCTACGTTCTCTACGGCGTTTATAACGTCACCATGGTGGT
AGTGTTGCTCAACATGCTAATAGCCATGATAAACAACTCCTATCAGGAAATTGAGGAGGATGCAGATGTG
GAATGGAAGTTCGCCCGAGCAAAACTCTGGCTGTCTTACTTTGATGAAGGAAGAACTCTACCTGCTCCTT
TTAATCTAGTGCCAAGTCCTAAATCATTTTATTATCTCATAATGAGAATCAAGATGTGCCTCATAAAACT
CTGCAAATCTAAGGCCAAAAGCTGTGAAAATGACCTTGAAATGGGCATGCTGAATTCCAAATTCAAGAAG
ACTCGCTACCAGGCTGGCATGAGGAATTCTGAAAATCTGACAGCAAATAACACTTTGAGCAAGCCCACCA
GATACCAGAAAATCATGAAACGGCTCATAAAAAGATACGTCCTGAAAGCCCAGGTGGACAGAGAAAATGA
CGAAGTCAATGAAGGCGAGCTGAAGGAAATCAAGCAAGATATCTCCAGCCTGCGCTATGAGCTTCTTGAG
GAAAAATCTCAAGCTACTGGTGAGCTGGCAGACCTGATTCAACAACTCAGCGAGAAGTTTGGAAAGAACT
TAAACAAAGACCACCTGAGGGTGAACAAGGGCAAAGACATTTAG

Translation (807 aa):
MLRNSTFKNMQRRHTTLREKGRRQAIRGPAYMFNEKGTSLTPEEERFLDSAEYGNIPVVRKMLEESKTLN
FNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARVGDALLLAISKGYVRIVEAILNHPAFAQGQRLTLS
PLEQELRDDDFYAYDEDGTRFSHDITPIILAAHCQEYEIVHILLLKGARIERPHDYFCKCNECTEKQRKD
SFSHSRSRMNAYKGLASAAYLSLSSEDPVLTALELSNELARLANIETEFKNDYRKLSMQCKDFVVGVLDL
CRDTEEVEAILNGDVNFQVWSDHHRPSLSRIKLAIKYEVKKLGRTLRSPFMKFVAHAVSFTIFLGLLVVN
ASDRFEGVKTLPNETFTDYPKQIFRVKTTQFSWTEMLIMKWVLGMIWSECKEIWEEGPREYVLHLWNLLD
FGMLSIFVASFTARFMAFLKATEAQLYVDQHVQDDTLHNVSLPPEVAYFTYARDKWWPSDPQIISEGLYA
IAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYRGAKYNPAFTT
VEESFKTLFWSIFGLSEVISVVLKYDHKFIENIGYVLYGVYNVTMVVVLLNMLIAMINNSYQEIEEDADV
EWKFARAKLWLSYFDEGRTLPAPFNLVPSPKSFYYLIMRIKMCLIKLCKSKAKSCENDLEMGMLNSKFKK
TRYQAGMRNSENLTANNTLSKPTRYQKIMKRLIKRYVLKAQVDRENDEVNEGELKEIKQDISSLRYELLE
EKSQATGELADLIQQLSEKFGKNLNKDHLRVNKGKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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