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Report for CCDS93098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93098.1 Public Homo sapiens 21 LCA5L 24 110 108 CCDS HistoryNCBI Gene:150082Re-query CCDS DB by CCDS ID:93098.1Re-query CCDS DB by GeneID:150082See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485895.6 ENSP00000475187.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485895.6Link to Ensembl Protein Viewer:ENSP00000475187.1Re-query CCDS DB by Nucleotide ID:ENST00000485895Re-query CCDS DB by Protein ID:ENSP00000475187
Original member Current member NCBI NM_001384297.1 NP_001371226.1 Accepted alive Link to Nucleotide Sequence:NM_001384297.1Link to Protein Sequence:NP_001371226.1Re-query CCDS DB by Nucleotide ID:NM_001384297Re-query CCDS DB by Protein ID:NP_001371226Link to BLAST:NP_001371226.1
Original member Current member NCBI NM_001384298.1 NP_001371227.1 Accepted alive Link to Nucleotide Sequence:NM_001384298.1Link to Protein Sequence:NP_001371227.1Re-query CCDS DB by Nucleotide ID:NM_001384298Re-query CCDS DB by Protein ID:NP_001371227Link to BLAST:NP_001371227.1
Original member Current member NCBI NM_001384299.1 NP_001371228.1 Accepted alive Link to Nucleotide Sequence:NM_001384299.1Link to Protein Sequence:NP_001371228.1Re-query CCDS DB by Nucleotide ID:NM_001384299Re-query CCDS DB by Protein ID:NP_001371228Link to BLAST:NP_001371228.1
Original member Current member NCBI NM_001384300.1 NP_001371229.1 Accepted alive Link to Nucleotide Sequence:NM_001384300.1Link to Protein Sequence:NP_001371229.1Re-query CCDS DB by Nucleotide ID:NM_001384300Re-query CCDS DB by Protein ID:NP_001371229Link to BLAST:NP_001371229.1
Original member Current member NCBI NM_001384301.1 NP_001371230.1 Accepted alive Link to Nucleotide Sequence:NM_001384301.1Link to Protein Sequence:NP_001371230.1Re-query CCDS DB by Nucleotide ID:NM_001384301Re-query CCDS DB by Protein ID:NP_001371230Link to BLAST:NP_001371230.1
Original member Current member NCBI NM_001384302.1 NP_001371231.1 Accepted alive Link to Nucleotide Sequence:NM_001384302.1Link to Protein Sequence:NP_001371231.1Re-query CCDS DB by Nucleotide ID:NM_001384302Re-query CCDS DB by Protein ID:NP_001371231Link to BLAST:NP_001371231.1

Chromosomal Locations for CCDS 93098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39422946 39423490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39428172 39428493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGTCTTTGGCTGATCTAACAAAAACAAATATAGATGAGCATTTCTTCGGCGTGGCATTAGAAAACAATA
GGAGGTCTGCAGCATGCAAGAGAAGCCCAGGCACAGGCGATTTTTCACGGAACAGTAATGCTTCCAATAA
GAGTGTTGATTATAGCAGATCTCAGTGCTCCTGTGGAAGTTTAAGTTCTCAGTATGATTATTCAGAAGAC
TTTCTCTGTGATTGTTCAGAAAAGGCTATTAATAGAAATTATTTAAAGCAGCCTGTGGTAAAAGAAAAGG
AGAAGAAAAAGTATAATGTTTCTAAAATCTCCCAATCTAAAGGCCAGAAGGAAATATCAGTTGAAAAAAA
GCACACCTGGAATGCATCACTCTTTAATTCTCAAATCCATATGATTGCCCAAAGAAGAGATGCTATGGCT
CATCGAATACTCTCAGCAAGGCTTCATAAAATTAAAGGACTAAAAAATGAATTAGCTGATATGCATCATA
AATTGGAAGCCATCCTTACAGAAAACCAATTTTTGAAACAACTTCAGCTTAGGCATTTGAAAGCTATAGG
AAAATATGAGAATTCACAAAATAATCTACCTCAAATTATGGCTAAACATCAGAATGAAGTAAAAAATTTA
AGGCAACTACTTAGGAAATCCCAGGAAAAGGAAAGAACTCTATCTAGGAAACTTAGAGAAACTGACAGCC
AGTTACTGAAGACTAAAGATATCTTGCAGGCACTGCAGAAACTTTCTGAAGACAAAAACCTTGCAGAAAG
GGAAGAACTCACTCATAAATTATCTATTATCACAACAAAAATGGACGCAAATGACAAAAAAATACAGGTC
TGTATTTCAGGGGCCCAGACAGTTTAA

Translation (288 aa):
MSLADLTKTNIDEHFFGVALENNRRSAACKRSPGTGDFSRNSNASNKSVDYSRSQCSCGSLSSQYDYSED
FLCDCSEKAINRNYLKQPVVKEKEKKKYNVSKISQSKGQKEISVEKKHTWNASLFNSQIHMIAQRRDAMA
HRILSARLHKIKGLKNELADMHHKLEAILTENQFLKQLQLRHLKAIGKYENSQNNLPQIMAKHQNEVKNL
RQLLRKSQEKERTLSRKLRETDSQLLKTKDILQALQKLSEDKNLAEREELTHKLSIITTKMDANDKKIQV
CISGAQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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