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Report for CCDS93031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93031.1 Public Homo sapiens 20 CDK5RAP1 24 110 108 CCDS HistoryNCBI Gene:51654Re-query CCDS DB by CCDS ID:93031.1Re-query CCDS DB by GeneID:51654See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93031.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357886.8 ENSP00000350558.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357886.8Link to Ensembl Protein Viewer:ENSP00000350558.4Re-query CCDS DB by Nucleotide ID:ENST00000357886Re-query CCDS DB by Protein ID:ENSP00000350558
Original member Current member NCBI NM_001365728.1 NP_001352657.1 Accepted alive Link to Nucleotide Sequence:NM_001365728.1Link to Protein Sequence:NP_001352657.1Re-query CCDS DB by Nucleotide ID:NM_001365728Re-query CCDS DB by Protein ID:NP_001352657Link to BLAST:NP_001352657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352657.1 601 Q96SZ6-1 601 100% 0 0

Chromosomal Locations for CCDS 93031.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33359043 33359123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33360351 33360491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33366859 33367008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33370499 33370629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33372642 33372697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33374115 33374212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33379461 33379691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33383480 33383521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33385650 33385770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33387323 33387533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33392142 33392242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33394032 33394066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33395013 33395116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33396761 33397064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGCACCCTTTACAGTGTGTCCTCCAAGTGCAGAGGTCTCTGGGGTGGGGACCATTGGCCTCTGTGTCTT
GGCTGTCGCTGAGGATGTGCAGGGCACACAGCAGTCTCTCTAGTACCATGTGTCCCAGTCCAGAGAGGCA
GGAGGATGGAGCTCGGAAGGATTTCAGCTCCAGGCTGGCTGCTGGACCGACTTTTCAACATTTTTTAAAA
AGTGCCTCAGCTCCTCAGGAGAAGCTGTCTTCAGAAGTGGAAGACCCACCTCCCTATCTCATGATGGATG
AACTTCTTGGAAGGCAGAGAAAAGTCTACCTCGAGACCTATGGCTGCCAGATGAATGTGAATGACACAGA
GATAGCCTGGTCCATCTTACAGAAGAGTGGCTACCTGCGGACCAGTAACCTCCAAGAGGCAGATGTGATT
CTCCTTGTCACATGCTCTATCAGGGAGAAGGCTGAGCAGACCATCTGGAACCGTTTACATCAGCTTAAAG
CCTTGAAGACAAGGCGGCCCCGCTCCCGGGTTCCTCTGAGGATTGGAATTCTAGGCTGCATGGCTGAGAG
GTTGAAGGAGGAGATTCTCAACAGAGAGAAAATGGTAGATATTTTGGCTGGTCCTGATGCCTACCGGGAC
CTTCCCCGGCTGCTGGCTGTTGCTGAGTCGGGCCAGCAAGCTGCCAACGTGCTGCTCTCTCTGGACGAGA
CCTATGCTGATGTCATGCCAGTCCAGACAAGCGCCAGTGCCACGTCTGCCTTTGTGTCAATCATGCGAGG
CTGTGACAACATGTGTAGCTACTGCATTGTTCCTTTCACCCGGGGCAGGGAGAGGAGTCGGCCTATTGCC
TCCATTCTAGAGGAAGTGAAGAAGCTTTCTGAGCAGGTGTTCCTCCCACCTCGGCCTCCCAAAGTGTTGG
GATTACAGGGGCTGAAAGAAGTGACACTTCTTGGTCAGAATGTTAATAGTTTTCGGGACAATTCGGAGGT
CCAGTTCAACAGTGCAGTGCCTACCAATCTCAGTCGTGGCTTTACCACCAACTATAAAACCAAGCAAGGA
GGACTTCGTTTTGCTCATCTTCTGGATCAGGTCTCCAGAGTAGATCCTGAAATGAGGATCCGTTTTACCT
CTCCCCACCCCAAGGATTTTCCTGATGAGGTTCTGCAGCTGATTCATGAGAGAGATAACATCTGTAAACA
GATCCACCTGCCAGCCCAGAGTGGAAGCAGCCGTGTGTTGGAGGCCATGCGGAGGGGATATTCAAGAGAA
GCTTATGTGGAGTTAGTTCACCATATTAGAGAATCTATTCCAGGTGTGAGCCTCAGCAGCGATTTCATTG
CTGGCTTTTGTGGTGAGACGGAGGAAGATCACGTCCAGACAGTCTCTTTGCTCCGGGAAGTTCAGTACAA
CATGGGCTTCCTCTTTGCCTACAGCATGAGACAGAAGACACGGGCATATCATAGGCTGAAGGATGATGTC
CCGGAAGAGGTAAAATTAAGGCGTTTGGAGGAACTCATCACTATCTTCCGAGAAGAAGCAACAAAAGCCA
ATCAGACCTCTGTGGGCTGTACCCAGTTGGTGCTAGTGGAAGGGCTCAGTAAACGCTCTGCCACTGACCT
GTGTGGCAGGAATGATGGAAACCTTAAGGTGATCTTCCCTGATGCAGAGATGGAGGATGTCAATAACCCT
GGGCTCAGGGTCAGAGCCCAGCCTGGGGACTATGTGCTGGTGAAGATCACCTCAGCCAGTTCTCAGACAC
TTAGGGGACATGTTCTCTGCAGGACCACTCTGAGGGACTCTTCTGCATATTGCTGA

Translation (601 aa):
MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLAAGPTFQHFLK
SASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVI
LLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD
LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIA
SILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQG
GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSRE
AYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDV
PEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNP
GLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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