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Report for CCDS92838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92838.1 Public Homo sapiens 2 LIMS4 24 110 108 CCDS HistoryNCBI Gene:100288695Re-query CCDS DB by CCDS ID:92838.1Re-query CCDS DB by GeneID:100288695See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000632897.2 ENSP00000488340.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000632897.2Link to Ensembl Protein Viewer:ENSP00000488340.1Re-query CCDS DB by Nucleotide ID:ENST00000632897Re-query CCDS DB by Protein ID:ENSP00000488340
Original member Current member NCBI NM_001371340.3 NP_001358269.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371340.3Link to Protein Sequence:NP_001358269.1Re-query CCDS DB by Nucleotide ID:NM_001371340Re-query CCDS DB by Protein ID:NP_001358269Link to BLAST:NP_001358269.1

Chromosomal Locations for CCDS 92838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110446739 110446886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110447085 110447160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110449819 110449867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110451161 110451253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110451864 110452014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110454851 110455000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110455435 110455555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110457030 110457096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110468095 110468254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110472597 110472778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGCCTTCTCAGGCCGAGCGCGCCCCTGCATTATCCCAGAGAACGAAGAAATCCCCCGAGCAGCCCTTA
ACACTGTCCACGAGGCCAATGGGACCGAGGACGAGAGGGCTGTTTCCAAACTGCAGCGCAGGCACAGTGA
CGTGAAAGTCTACAAGGAGTTCTGTGACTTTTATGCGAAATTCAACATGGCCAACGCCCTGGCCAGCGCC
ACTTGCGAGCGCTGCAAGGGCGGCTTTGCGCCCGCTGAGACGATCGTGAACAGTAATGGGGAGCTGTACC
ATGAGCAGTGTTTCGTGTGCGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTCTATGAGTTTGAAGG
AAGAAAGTACTGTGAACATGACTTTCAGATGCTCTTTGCCCCTTGCTGTCATCAGTGTGGTGAATTCATC
ATTGGCCGAGTTATCAAAGCCATGAATAACAGCTGGCATCCGGAGTGCTTCCGCTGTGACCTCTGCCAGG
AAGTTCTGGCAGATATCGGGTTTGTCAAGAATGCTGGGAGACACCTGTGTCGCCCCTGTCATAATCGTGA
GAAAGCCAGAGGCCTTGGGAAATACATCTGCCAGAAATGCCATGCTATCATCGATGAGCAGCCTCTGATA
TTCAAGAACGACCCCTACCATCCAGACCATTTCAACTGCGCCAACTGCGGGAAGGATCTGACTGCCGATG
CACAGGAGCTGAAAGGGGAGCTATACTGCCTGCCATGCCATGATAAAATGGGGGTCCCCATCTGTGGCGC
TTGCCGACGGCCCATCGAAGGGCGTGTGGTGAACGCCATGGGCAAGCAGTGGCATGTGGAGCATTTTGTT
TGTGCCAAGTGTGAGAAACCCTTTCTTGGACATCGCCATTATGAGAGGAAAGGCCTGGCGTATTGTGAAA
CTCACTATAACCAGCTATTTGGTGATGTTTGCTTCCACTGCAATCGTGTTATAGAAGGTGATGTGGTCTC
TGCTCTTAATAAGGCCTGGTGCGTGAACTGCTTTGCCTGTTCTACCTGCAACACTAAATTAACACTCAAG
GATAAGTTTGTTGAAATTGACCTAAAGCCAGTCTGCAAACACTGTTATGAGAAAATGCCAGAAGAATTTA
AGAGGCGACTTGCCAAACGGGAGAGAGAAGCAAAGGATAAGGACAAGCAGAAAAAGAAAAAGCCAGTCTG
TTTGTAA

Translation (398 aa):
MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASA
TCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFI
IGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLI
FKNDPYHPDHFNCANCGKDLTADAQELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFV
CAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLK
DKFVEIDLKPVCKHCYEKMPEEFKRRLAKREREAKDKDKQKKKKPVCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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