NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92118.1 Public Homo sapiens 16 NPIPA9 24 110 108 CCDS HistoryNCBI Gene:105376752Re-query CCDS DB by CCDS ID:92118.1Re-query CCDS DB by GeneID:105376752See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427999.6 ENSP00000389275.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427999.6Link to Ensembl Protein Viewer:ENSP00000389275.2Re-query CCDS DB by Nucleotide ID:ENST00000427999Re-query CCDS DB by Protein ID:ENSP00000389275
Original member Current member NCBI NM_001401710.1 NP_001388639.1 Accepted alive Link to Nucleotide Sequence:NM_001401710.1Link to Protein Sequence:NP_001388639.1Re-query CCDS DB by Nucleotide ID:NM_001401710Re-query CCDS DB by Protein ID:NP_001388639Link to BLAST:NP_001388639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001388639.1 369 A0A0B4J1W7 369 100% 0 0

Chromosomal Locations for CCDS 92118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18358121 18358588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18359948 18359983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18360093 18360153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18361170 18361277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18364227 18364371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18364535 18364634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18368258 18368386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18372723 18372785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGTTTTGTTGCTTAGGATATGAATGGCTGAGCGGAGGCTGTAAAACCTGGCACTCTGCTTGGGTTATCA
ATACTCTGGCTGACCATCGTCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACTTATCATTACTGT
GTTTCTGAGAAGTTATAAATTTGCCATCTCCCTCTGCACAAGTTACCTTTGTGTGTCTTTCCTGAAGACT
ATCTTCCCGTCTCAAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCAGGAGGTCCAACTGCC
GTAGACAGGAAGGAATTAAAATTGTCCTGGAAGACATCTTTACTTTATGGAGACAGGTGGAAACCAAAGT
TCGAGCTAAAATCCGTAAGATGAAGGTGACAACAAAAGTCAACCGTCATGACAAAATCAATGGAAAGAGG
AAGACCGCCAAAGAACATCTGAGGAAACTAAGCATGAAAGAACGTGAGCACGGAGAAAAGGAGAGGCAGG
TGTCAGAGGCAGAGGAAAATGGGAAATTGGATATGAAAGAAATACACACCTACATGGAAATGTTTCAACG
TGCGCAAGCGTTGCGGCGGCGGGCAGAGGACTACTACAGATGCAAAATCACCCCTTCTGCAAGAAAGCCT
CTTTGCAACCGGGTCAGAATGGCGGCAGTGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACC
TCACAGCTGAAACTTTAAAAAACAGGATGGGCCACCAGCCACCTCCTCCAACTCAACAACATTCTATAAT
TGATAACTCCCTGAGCCTCAAGACACCTTCCGAGTGTGTGCTCTATCCCCTTCCACCCTCAGCGGATGAT
AATCTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCTACCCTCAGCGGATGATA
ATCTCAAGACACCTGCCGAGTGCCTGCTCTATCCCCTTCCACCCTCAGCGGATGATAATCTCAAGACACC
TCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCGGATGATAATCTCAAGACACCT
CCTGAGTGTGTCTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTCAAGAAACTAA

Translation (369 aa):
MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKT
IFPSQNGHDGSTDVQQRARRSNCRRQEGIKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKR
KTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKP
LCNRVRMAAVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECVLYPLPPSADD
NLKTPPECLLTPLPPSALPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSADDNLKTP
PECVCSLPFHPQRMIISRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH