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Report for CCDS91118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91118.1 Public Homo sapiens 1 CLEC20A 24 110 108 CCDS HistoryNCBI Gene:400797Re-query CCDS DB by CCDS ID:91118.1Re-query CCDS DB by GeneID:400797See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 91118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000623247.3 ENSP00000490899.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000623247.3Link to Ensembl Protein Viewer:ENSP00000490899.1Re-query CCDS DB by Nucleotide ID:ENST00000623247Re-query CCDS DB by Protein ID:ENSP00000490899
Original member Current member NCBI NM_001395331.1 NP_001382260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395331.1Link to Protein Sequence:NP_001382260.1Re-query CCDS DB by Nucleotide ID:NM_001395331Re-query CCDS DB by Protein ID:NP_001382260Link to BLAST:NP_001382260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382260.1 400 Q6ZU45 400 100% 0 0

Chromosomal Locations for CCDS 91118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 178479535 178479615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178482312 178482397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178483175 178483282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178488501 178488599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178490072 178490437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178492501 178492566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178494454 178494810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178496900 178496939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGCTGCCCCGGGCGCTGCTGCTCTCCTTCTGCGCAGCAGCCCTGCAGCTGGTGAGCAGTAAGAGGGACT
TGGTTCTGGTGAAGGAGGCGCTGAGCTGGTACGACGCCCAGCAGCACTGCCGGCTGCACTACACAGACCT
CGCTGACCTGCAGCCAAGTGGCCTGTGGAAGCTCTACTCCCTCATGACCAGCACCCCGGCTTGGATTGGC
CTCTTCTTCGACGCAAGCACTTCTGGCCTGAGATGGTCCAGCGGCTCCACCTTCACAGCCCTGGAGTGGG
GCCAGAAGCTACCTGAATTTGGGGTGGGCTTCTGTGCCACGCTGTACACTTGGCTGAAATTACCCAGCAT
AGGGGCTGCCTCCTGCACAGCCCAGAAGCCCTTCCTCTGCTACTGTGACCCTGACGTCGGGCACCTCATC
TCCACGAAGCCCTCTCTCAGCCTGACCACCTCTCCAAAGCCAGCTGTGGTCCAGATCAGTGGTCAGACCT
TCATGCGATTTGACCAAGTGATGACATGGTCCTCGGCCCTGCTGTACTGCCGCAGCCACCACACGGATCT
GGCCGACCTGCAGATGGTGACGGATGAGACAGGCAAGGAGGCCTTGAGATCCATCATGAGTGAGACTGAA
GCCTGGATTGGCCTCTACCTCAATGCAAACTCCGGATCTCTGAGCTGGTCCAGTGACCTGGGGGCCAGCA
TCCCCTCCTGGCTGCAGGTGCCGATGATGGTGAGAGGACTGTGCACAGCTCTTGGCATCTATATGACCTA
CTCCCCAAAAGTGTACTCAGTGAACTGCTCTTCCCTGCTGCCCTTCTTCTGCTTCTATGACTCCTCCACT
GGACACCGGGCATCAGCAGAGTTGCCTCCACTCTTCCACACTTCCCCCACAGAAATGACAGAGGAAACAA
CTCCCAGGCCAGGCAGAGCTGTGGCCAGTGTAGGGAGTGGCACTGATAGAAGAGATACAGCTGCTGCCAC
GGAGGCCCAACATCTGAGTTCAGAATCTAAAGAAAAAACATCAGCACAAAAATCAGGGCACCCTTTTGGA
ATCTTGAAAGCAGACTTTACCATCTCAACTCTGATGGACCCAGAAGAGATGAAAGACCAATTTCTGAGAC
AGATCCAGGAAGTCTTAAAGCTTACATTAGGTCACGAACAATTTAGACTGAAATGGGTCAGCTTCGAAGT
GAACAAAAAATAG

Translation (400 aa):
MLPRALLLSFCAAALQLVSSKRDLVLVKEALSWYDAQQHCRLHYTDLADLQPSGLWKLYSLMTSTPAWIG
LFFDASTSGLRWSSGSTFTALEWGQKLPEFGVGFCATLYTWLKLPSIGAASCTAQKPFLCYCDPDVGHLI
STKPSLSLTTSPKPAVVQISGQTFMRFDQVMTWSSALLYCRSHHTDLADLQMVTDETGKEALRSIMSETE
AWIGLYLNANSGSLSWSSDLGASIPSWLQVPMMVRGLCTALGIYMTYSPKVYSVNCSSLLPFFCFYDSST
GHRASAELPPLFHTSPTEMTEETTPRPGRAVASVGSGTDRRDTAAATEAQHLSSESKEKTSAQKSGHPFG
ILKADFTISTLMDPEEMKDQFLRQIQEVLKLTLGHEQFRLKWVSFEVNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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