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Report for CCDS8840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8840.1 Public Homo sapiens 12 KRT78 24 110 108 CCDS HistoryNCBI Gene:196374Re-query CCDS DB by CCDS ID:8840.1Re-query CCDS DB by GeneID:196374See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304620.5 ENSP00000306261.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304620.5Link to Ensembl Protein Viewer:ENSP00000306261.4Re-query CCDS DB by Nucleotide ID:ENST00000304620Re-query CCDS DB by Protein ID:ENSP00000306261
Original member Current member NCBI NM_173352.4 NP_775487.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173352.4Link to Protein Sequence:NP_775487.2Re-query CCDS DB by Nucleotide ID:NM_173352Re-query CCDS DB by Protein ID:NP_775487Link to BLAST:NP_775487.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775487.2 520 Q8N1N4-1 520 100% 0 0

Chromosomal Locations for CCDS 8840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52839113 52839372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52839453 52839487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52839764 52839984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52844093 52844218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52844559 52844723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52846197 52846292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52846764 52846824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52847907 52848121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52848547 52848930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGTCTCTCTCCCCATGCCGGGCCCAGAGGGGCTTCAGCGCTCGCTCAGCCTGTTCTGCTCGCTCAAGGG
GCCGCAGCAGGGGAGGCTTCAGCAGCAGGGGCGGCTTCAGCAGCAGGAGCCTTAATTCCTTTGGGGGGTG
CCTGGAAGGCTCTCGTGGGAGTACCTGGGGGTCAGGGGGTAGGCTGGGGGTGCGGTTTGGGGAGTGGAGT
GGTGGGCCTGGGCTCTCCCTGTGCCCTCCGGGGGGCATCCAAGAAGTGACCATCAACCAGAATCTGCTGA
CCCCACTGAAGATTGAGATCGATCCCCAGTTCCAGGTGGTGCGGACGCAGGAGACCCAGGAGATCAGAAC
CCTCAACAACCAGTTTGCTTCCTTCATTGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGGTCCTGGAG
ACGAAGTGGCATCTGCTGCAGCAACAGGGGTTGAGTGGCAGCCAGCAGGGCCTGGAGCCTGTCTTTGAGG
CCTGCCTGGATCAGCTCAGGAAGCAGCTGGAGCAGCTCCAGGGAGAACGAGGGGCTCTGGATGCTGAGTT
GAAGGCCTGCCGGGACCAGGAGGAGGAGTATAAGTCCAAGTATGAGGAGGAGGCCCACAGGCGTGCCACA
CTTGAGAACGACTTTGTGGTCCTCAAGAAGGATGTGGATGGGGTTTTCCTGAGCAAGATGGAGTTGGAGG
GCAAGCTGGAGGCTCTGAGAGAGTACCTCTACTTCTTGAAGCATCTGAATGAAGAAGAGCTGGGCCAGCT
CCAGACCCAGGCCAGCGACACGTCTGTGGTGCTGTCCATGGACAACAACCGCTACCTGGACTTCAGCAGC
ATCATCACTGAGGTCCGCGCCCGGTACGAGGAGATCGCCCGGAGCAGCAAGGCTGAGGCTGAGGCCTTGT
ACCAGACCAAGTACCAGGAACTTCAGGTGTCTGCCCAGCTTCATGGGGACAGGATGCAGGAAACGAAAGT
CCAGATCTCTCAGCTACACCAAGAGATTCAGAGGCTGCAGAGTCAGACTGAGAACCTCAAGAAGCAGAAC
GCCAGCCTGCAGGCCGCCATCACTGATGCTGAGCAGCGTGGGGAGCTGGCCCTCAAGGACGCTCAGGCCA
AGGTGGACGAGCTGGAGGCTGCTCTGAGGATGGCCAAGCAGAACCTGGCCCGGCTGCTGTGCGAGTACCA
GGAGCTGACGAGCACGAAGCTTTCCCTGGATGTGGAGATTGCCACTTACCGCAGGCTGCTGGAGGGCGAG
GAGTGCAGGATGTCTGGGGAGTGCACCAGCCAGGTCACTATCTCCTCGGTGGGAGGCAGCGCTGTCATGT
CTGGAGGAGTTGGTGGAGGCTTGGGGAGCACTTGTGGACTCGGTAGTGGGAAAGGCAGCCCTGGGTCCTG
CTGCACCAGCATTGTGACTGGAGGCTCCAACATCATTCTGGGCTCTGGGAAGGACCCTGTTTTGGATTCC
TGCTCTGTGTCTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGAGTC
TGAAGACATCCATCACCTACTGA

Translation (520 aa):
MSLSPCRAQRGFSARSACSARSRGRSRGGFSSRGGFSSRSLNSFGGCLEGSRGSTWGSGGRLGVRFGEWS
GGPGLSLCPPGGIQEVTINQNLLTPLKIEIDPQFQVVRTQETQEIRTLNNQFASFIDKVRFLEQQNKVLE
TKWHLLQQQGLSGSQQGLEPVFEACLDQLRKQLEQLQGERGALDAELKACRDQEEEYKSKYEEEAHRRAT
LENDFVVLKKDVDGVFLSKMELEGKLEALREYLYFLKHLNEEELGQLQTQASDTSVVLSMDNNRYLDFSS
IITEVRARYEEIARSSKAEAEALYQTKYQELQVSAQLHGDRMQETKVQISQLHQEIQRLQSQTENLKKQN
ASLQAAITDAEQRGELALKDAQAKVDELEAALRMAKQNLARLLCEYQELTSTKLSLDVEIATYRRLLEGE
ECRMSGECTSQVTISSVGGSAVMSGGVGGGLGSTCGLGSGKGSPGSCCTSIVTGGSNIILGSGKDPVLDS
CSVSGSSAGSSCHTILKKTVESSLKTSITY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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