NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87645.1 Public Homo sapiens 9 ELAVL2 24 110 108 CCDS HistoryNCBI Gene:1993Re-query CCDS DB by CCDS ID:87645.1Re-query CCDS DB by GeneID:1993See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380110.8 ENSP00000369453.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380110.8Link to Ensembl Protein Viewer:ENSP00000369453.4Re-query CCDS DB by Nucleotide ID:ENST00000380110Re-query CCDS DB by Protein ID:ENSP00000369453
Original member Current member NCBI NM_001351455.2 NP_001338384.1 Accepted alive Link to Nucleotide Sequence:NM_001351455.2Link to Protein Sequence:NP_001338384.1Re-query CCDS DB by Nucleotide ID:NM_001351455Re-query CCDS DB by Protein ID:NP_001338384Link to BLAST:NP_001338384.1
Original member Current member NCBI NM_001385697.1 NP_001372626.1 Accepted alive Link to Nucleotide Sequence:NM_001385697.1Link to Protein Sequence:NP_001372626.1Re-query CCDS DB by Nucleotide ID:NM_001385697Re-query CCDS DB by Protein ID:NP_001372626Link to BLAST:NP_001372626.1
Original member Current member NCBI NM_001385698.1 NP_001372627.1 Accepted alive Link to Nucleotide Sequence:NM_001385698.1Link to Protein Sequence:NP_001372627.1Re-query CCDS DB by Nucleotide ID:NM_001385698Re-query CCDS DB by Protein ID:NP_001372627Link to BLAST:NP_001372627.1
Original member Current member NCBI NM_001385704.1 NP_001372633.1 Accepted alive Link to Nucleotide Sequence:NM_001385704.1Link to Protein Sequence:NP_001372633.1Re-query CCDS DB by Nucleotide ID:NM_001385704Re-query CCDS DB by Protein ID:NP_001372633Link to BLAST:NP_001372633.1

Chromosomal Locations for CCDS 87645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 23692557 23692887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23693448 23693486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23701379 23701604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23704918 23705071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23731022 23731125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23762006 23762249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23765009 23765080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCAGTCAGACTGTGTGATGTGGCTTCTCTGCTTAGAAGTGGTTCGTGGGCAGCAGAGCCTTGGACCG
GGCAGGTAATTGCTGCCATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCC
AACCACCATAAACAACAACTGTTCGTCACCAGTTGACTCTGGGAACACAGAAGACAGCAAGACCAACTTA
ATAGTCAACTACCTTCCTCAGAACATGACACAGGAGGAACTAAAGAGTCTCTTTGGGAGCATTGGTGAAA
TAGAGTCCTGTAAGCTTGTAAGAGACAAAATAACAGGGCAGAGCTTGGGATATGGCTTTGTGAACTACAT
TGACCCCAAGGATGCAGAGAAAGCTATCAACACCCTGAATGGATTGAGACTTCAAACCAAAACAATAAAA
GTTTCCTATGCTCGCCCAAGTTCAGCTTCTATCAGAGATGCAAATTTATATGTCAGCGGACTTCCAAAAA
CAATGACCCAGAAGGAGTTGGAACAGCTTTTTTCACAATATGGACGCATTATTACTTCTCGTATTCTTGT
CGACCAGGTCACTGGCATATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGAATTGAGGCAGAAGAA
GCTATCAAAGGCCTAAATGGCCAGAAACCTCCCGGTGCCACGGAGCCAATCACTGTAAAGTTTGCTAATA
ACCCAAGCCAAAAAACCAATCAGGCCATCCTTTCCCAGCTGTACCAGTCTCCAAACAGAAGGTATCCAGG
ACCGCTAGCTCAGCAGGCACAGCGTTTTAGGTTGGACAATCTGCTCAATATGGCTTATGGAGTAAAGAGC
AGGTTTTCTCCAATGACCATTGACGGAATGACCAGTTTGGCTGGAATTAATATCCCTGGGCACCCTGGAA
CAGGGTGGTGTATATTTGTGTACAACCTGGCTCCTGACGCAGATGAGAGTATCCTGTGGCAAATGTTTGG
GCCTTTTGGAGCTGTCACCAATGTGAAGGTCATCCGTGACTTTAACACCAATAAATGCAAAGGTTTTGGA
TTTGTGACTATGACAAACTATGATGAGGCTGCCATGGCGATAGCTAGCCTCAATGGATACCGTCTGGGAG
ACAGAGTACTGCAGGTCTCCTTTAAGACAAACAAAACGCACAAAGCCTAA

Translation (389 aa):
MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNL
IVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE
AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKS
RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH