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Report for CCDS87096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87096.1 Public Homo sapiens 3 HTD2 24 110 108 CCDS HistoryNCBI Gene:109703458Re-query CCDS DB by CCDS ID:87096.1Re-query CCDS DB by GeneID:109703458See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87096.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000477305.5 ENSP00000481593.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477305.5Link to Ensembl Protein Viewer:ENSP00000481593.1Re-query CCDS DB by Nucleotide ID:ENST00000477305Re-query CCDS DB by Protein ID:ENSP00000481593
Original member Current member EBI ENST00000481972.5 ENSP00000482940.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481972.5Link to Ensembl Protein Viewer:ENSP00000482940.1Re-query CCDS DB by Nucleotide ID:ENST00000481972Re-query CCDS DB by Protein ID:ENSP00000482940
Original member Current member EBI ENST00000461393.7 ENSP00000484277.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000461393.7Link to Ensembl Protein Viewer:ENSP00000484277.1Re-query CCDS DB by Nucleotide ID:ENST00000461393Re-query CCDS DB by Protein ID:ENSP00000484277
Original member Current member NCBI NM_001348712.2 NP_001335641.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001348712.2Link to Protein Sequence:NP_001335641.1Re-query CCDS DB by Nucleotide ID:NM_001348712Re-query CCDS DB by Protein ID:NP_001335641Link to BLAST:NP_001335641.1
Original member Current member NCBI NM_001348713.1 NP_001335642.1 Accepted alive Link to Nucleotide Sequence:NM_001348713.1Link to Protein Sequence:NP_001335642.1Re-query CCDS DB by Nucleotide ID:NM_001348713Re-query CCDS DB by Protein ID:NP_001335642Link to BLAST:NP_001335642.1
Original member Current member NCBI NM_001348714.1 NP_001335643.1 Accepted alive Link to Nucleotide Sequence:NM_001348714.1Link to Protein Sequence:NP_001335643.1Re-query CCDS DB by Nucleotide ID:NM_001348714Re-query CCDS DB by Protein ID:NP_001335643Link to BLAST:NP_001335643.1
Original member Current member NCBI NM_001348715.1 NP_001335644.1 Accepted alive Link to Nucleotide Sequence:NM_001348715.1Link to Protein Sequence:NP_001335644.1Re-query CCDS DB by Nucleotide ID:NM_001348715Re-query CCDS DB by Protein ID:NP_001335644Link to BLAST:NP_001335644.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335641.1 168 P86397 168 100% 0 0
NP_001335642.1 168 P86397 168 100% 0 0
NP_001335643.1 168 P86397 168 100% 0 0
NP_001335644.1 168 P86397 168 100% 0 0

Chromosomal Locations for CCDS 87096.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58317614 58318120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGTTCCCACTAATTTCCAGCCATCACCTTTGGTGGGGTGGGCTTCGGAGGACAGTCTGTCTGAACCTGC
CAGTGCTGACCCTGCAGCACTTTCAGCATATGCACATCAAAGTTGGAGACCGCGCTGAACTTAGGAGGGC
CTTCACACAGACTGATGTGGCTACCTTCTCAGAATTAACAGGGGATGTCAATCCTTTGCATTTGAATGAA
GACTTTGCAAAACACACCAAGTTTGGAAATACAATTGTACATGGAGTTTTGATCAACGGACTTATCTCAG
CTCTCCTAGGAACTAAAATGCCAGGGCCAGGCTGTGTATTTCTTTCCCAGGAAATTAGCTTTCCAGCCCC
TTTATATATTGGAGAAGTTGTTTTAGCTTCTGCAGAAGTGAAAAAGCTGAAGCGGTTCATTGCTATTATT
GCAGTGTCATGTTCTGTAATAGAAAGTAAAAAGACTGTTATGGAAGGCTGGGTTAAAGTTATGGTTCCAG
AAGCTTCCAAATCCTGA

Translation (168 aa):
MFPLISSHHLWWGGLRRTVCLNLPVLTLQHFQHMHIKVGDRAELRRAFTQTDVATFSELTGDVNPLHLNE
DFAKHTKFGNTIVHGVLINGLISALLGTKMPGPGCVFLSQEISFPAPLYIGEVVLASAEVKKLKRFIAII
AVSCSVIESKKTVMEGWVKVMVPEASKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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