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Report for CCDS86392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86392.1 Public Homo sapiens 14 SLC35F4 24 110 108 CCDS HistoryNCBI Gene:341880Re-query CCDS DB by CCDS ID:86392.1Re-query CCDS DB by GeneID:341880See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554729.5 ENSP00000451990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554729.5Link to Ensembl Protein Viewer:ENSP00000451990.1Re-query CCDS DB by Nucleotide ID:ENST00000554729Re-query CCDS DB by Protein ID:ENSP00000451990
Original member Current member NCBI NM_001352014.2 NP_001338943.1 Accepted alive Link to Nucleotide Sequence:NM_001352014.2Link to Protein Sequence:NP_001338943.1Re-query CCDS DB by Nucleotide ID:NM_001352014Re-query CCDS DB by Protein ID:NP_001338943Link to BLAST:NP_001338943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338943.1 362 A4IF30-2 362 100% 0 0

Chromosomal Locations for CCDS 86392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 57564135 57564376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57566475 57566564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57569788 57569980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57571894 57572019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57581214 57581433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57589216 57589433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGTTCTGAAGGGCATCTGGGGACTCTTGATCATCTTGTCAGTATCATCATCTTGGGTTGGAACTACAC
AGATTGTAAAAATTACTTATAAGAACTTCTATTGCCCATTTTTCATGACTTGGTTTTCAACAAACTGGAA
CATTATGTTTTTCCCAGTCTATTATTCTGGTCATCTAGCCACTGCTCAAGAAAAGCAATCTCCAATGAAA
AAATTCAGGGAATGCAGTCGGATTTTTGGTGAAGATGGTCTGACGCTGAAACTCTTTCTTAAAAGAACTG
CTCCCTTTTCTATTCTATGGACTTTGACTAATTACCTTTATTTACTGGCTTTAAAGAAGCTGACGGCCAC
GGATGTCTCCGCTCTGTTCTGTTGTAACAAAGCCTTTGTCTTCTTGCTGTCATGGATTGTGCTGAAAGAC
AGGTTCATGGGAGTGAGGATAGTTGCTGCAATAATGGCAATTACCGGCATTGTCATGATGGCATATGCAG
ATAATTTCCACGCTGATTCCATCATAGGAGTGGCATTTGCGGTGGGCTCAGCCTCTACATCTGCATTATA
TAAGGTCTTGTTTAAAATGTTTCTTGGAAGTGCCAACTTTGGGGAAGCTGCACACTTTGTCTCCACCTTG
GGTTTCTTCAATTTGATCTTCATCTCCTTCACCCCAGTCATCTTGTATTTCACCAAGGTGGAGCACTGGT
CCTCTTTTGCTGCTCTGCCATGGGGCTGTCTCTGTGGGATGGCAGGGCTGTGGCTGGCCTTCAACATCCT
GGTGAATGTTGGGGTGGTGCTGACATACCCAATCCTAATCTCCATTGGGACAGTGCTCAGCGTTCCTGGA
AATGCAGCTGTGGATCTCCTAAAGCAGGAGGTGATATTCAATGTTGTCCGCCTGGCTGCTACCATCATCA
TCTGCATTGGGTTTCTGCTGATGCTGTTGCCTGAGGAATGGGATGAAATCACCCTGAGGTTCATCAACAG
CCTGAAGGAAAAGAAGAGTGAGGAGCATGTGGATGATGTGACTGATCCCAGCATACACCTGCGGGGCAGA
GGCAGAGCCAATGGGACAGTGTCTATACCACTGGCTTAG

Translation (362 aa):
MVLKGIWGLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMK
KFRECSRIFGEDGLTLKLFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKD
RFMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTL
GFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPILISIGTVLSVPG
NAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEITLRFINSLKEKKSEEHVDDVTDPSIHLRGR
GRANGTVSIPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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