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Report for CCDS86132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86132.1 Public Homo sapiens 10 LCOR 24 110 108 CCDS HistoryNCBI Gene:84458Re-query CCDS DB by CCDS ID:86132.1Re-query CCDS DB by GeneID:84458See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86132.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421806.4 ENSP00000490116.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421806.4Link to Ensembl Protein Viewer:ENSP00000490116.2Re-query CCDS DB by Nucleotide ID:ENST00000421806Re-query CCDS DB by Protein ID:ENSP00000490116
Original member Current member NCBI NM_001346516.2 NP_001333445.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001346516.2Link to Protein Sequence:NP_001333445.1Re-query CCDS DB by Nucleotide ID:NM_001346516Re-query CCDS DB by Protein ID:NP_001333445Link to BLAST:NP_001333445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333445.1 1557 Q96JN0-3 1557 100% 0 0

Chromosomal Locations for CCDS 86132.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 96949058 96949295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96952103 96952196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96980793 96985134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4674 nt):
ATGCAGCGAATGATCCAACAATTTGCTGCTGAATATACCTCAAAAAATAGCTCTACTCAGGACCCCAGCC
AGCCCAATAGCACAAAGAACCAAAGCCTGCCGAAAGCATCTCCAGTCACCACCTCTCCCACGGCTGCAAC
TACTCAGAACCCTGTGCTCAGCAAACTTCTCATGGCTGACCAAGACTCACCTCTGGACCTTACTGTCAGA
AAGTCTCAGTCAGAACCTAGCGAACAAGACGGTGTACTTGATCTGTCCACTAAGAAAAGTCCATGTGCTG
GCAGCACTTCCCTGAGCCACTCTCCAGGCTGCTCCAGTACTCAAGGGAACGGTGAGAACTCAACAGAGGC
AAAAGCAGTAGATTCTAACAATCAGTCGAAGTCCCCACTGGAGAAATTTATGGTCAAACTGTGTACTCAT
CATCAAAAGCAATTCATTCGTGTTCTGAACGACCTGTACACTGAATCTCAACCAGGCACTGAGGACCTGC
AGCCTTCTGATTCGGGAGCAATGGATGTATCCACTTGCAATGCTGGCTGTGCCCAGCTCAGCACCAAACA
TAAGGAAAAAGATGCTCTGTGTCTCGATATGAAGTCTTCTGCTTCTGTAGATTTGTTCGTAGACTCGTCA
GACTCTCACAGCCCTCTACACTTGACGGAACAGACCCCGAAGAAGCCTCCTCCTGAGATAAACCCTGTAG
ATGGAAGAGAGAATGCCTTGACTGTTGTCCAGAAAGATTCCTCTGAACTTCCAACCACTAAATCGAATTC
TATTAATAGCAGTTCAGTGGATAGTTTCACTCCGGGATACCTCACTGCATCTAATTGTTCCTCAGTGAAC
TTCCACCACATCCCTAAAATCTTGGAGGGGCAGACCACTGGACAAGAGCAAGACACAAATGTGAACATAT
GTGAGGATGGTAAAGACCATATGCAGAGTTCAGCTTTAGTAGAAAGTCTAATTACAGTAAAAATGGCAGC
TGAGAATAGTGAGGAAGGCAATACCTGTATTATTCCTCAAAGAAATTTGTTCAAAGCTTTATCAGAAGAG
GCTTGGAACTCAGGGTTTATGGGGAACTCATCTAGAACTGCTGACAAAGAGAATACTTTACAGTGTCCAA
AAACACCTTTGCGCCAGGATTTAGAGGCAAATGAACAAGATGCAAGGCCAAAGCAAGAGAACCATCTTCA
CTCTCTGGGAAGAAATAAGGTGGGTTACCATTTACATCCCAGTGATAAGGGCCAGTTTGATCATTCCAAA
GATGGTTGGTTAGGCCCCGGCCCTATGCCAGCTGTACACAAAGCGGCAAATGGACACTCAAGAACCAAGA
TGATATCAACCTCCATCAAGACAGCTCGGAAAAGTAAAAGGGCATCAGGGCTGAGGATAAATGATTATGA
TAACCAGTGTGATGTTGTTTATATCAGTCAACCAATAACAGAATGCCACTTTGAGAATCAAAAATCAATA
TTATCTTCTCGGAAAACAGCCAGAAAGAGTACTCGAGGATACTTTTTCAATGGTGACTGTTGTGAGCTGC
CAACTGTTCGTACACTGGCCAGAAATTTACACTCCCAGGAAAAAGCAAGCTGCTCAGCATTGGCATCAGA
GGCAGTTTTCACTCCTAAGCAGACCCTTACAATTCCAGCCCCTAGACATACAGTAGATGTGCAGCTTCCC
AGAGAAGACAACCCTGAAGAACCTAGCAAGGAAATCACCTCTCACGAGGAAGGAGGTGGAGACGTTTCAC
CTCGAAAAGAACCTCAAGAGCCTGAGGTTTGCCCCACAAAGATTAAGCCGAACCTGAGCAGCTCCCCTAG
GTCAGAGGAAACGACAGCCTCCAGCCTGGTGTGGCCTCTCCCTGCTCACCTTCCTGAAGAGGACCTGCCA
GAAGGTGGCTCCACAGTCTCAGCTCCCACAGCAAGTGGGATGTCTTCTCCTGAACACAACCAACCACCAG
TTGCACTGTTGGATACGGAGGAGATGAGTGTACCCCAGGACTGTCACCTCCTTCCCTCCACTGAAAGCTT
TTCCGGGGGAGTCAGTGAAGATGTCATTTCTAGGCCTCATTCTCCTCCTGAAATAGTCAGTAGAGAAGAA
AGTCCTCAGTGCTCAGAAAATCAGAGTTCCCCAATGGGCTTGGAGCCCCCCATGAGTCTGGGAAAGGCTG
AGGACAACCAAAGCATCAGTGCTGAGGTTGAGTCTGGAGACACCCAGGAGCTAAATGTCGACCCACTCTT
GAAGGAAAGCAGCACTTTTACTGATGAAAACCCCAGTGAAACTGAGGAAAGTGAGGCAGCAGGTGGTATA
GGAAAATTAGAGGGAGAGGACGGTGATGTAAAATGCCTGTCAGAAAAAGACACGTATGATACAAGCATTG
ACTCACTCGAAGAGAATTTGGACAAGAAGAAAAAAGGTAAAAAATTCCCTGAGGCCTCTGATAGGTGCCT
AAGAAGTCAACTTTCGGATTCTTCCTCTGCTGACAGATGCCTAAGAAATCAGAGTTCAGATTCTTCCTCA
GCTTGTCTTGAAATCAAAGTTCCTAAAAATCCTAGTGCAAAACGTTCAAAAAAAGAAGGGCACCCTGGTG
GGACAACACCTAAGGGCCTTCTACCTGACAGTTTCCACACGGAAACTCTGGAGGACACAGAAAAGCCAAG
TGTCAATGAACGCCCCTCTGAGAAAGATGCTGAGCAGGAGGGCGAAGGCGGGGGGATCATCACCAGGCAG
ACTTTGAAAAACATGCTGGACAAAGAAGTCAAGGAGTTACGAGGAGAGATTTTCCCCAGCAGGGACCCCA
TAACCACAGCTGGACAGCCACTGCCTGGAGAGAGATTGGAAATCTATGTTCAGTCTAAAATGGATGAGAA
GAATGCTCATATCCCCTCAGAAAGTATTGCTTGTAAGAGGGACCCAGAACAGGCAAAAGAAGAGCCAGGG
CATATTCCCACACAGCATGTGGAGGAGGCTGTGAATGAGGTAGACAACGAAAACACCCAGCAGAAAGATG
ATGAGAGTGATGCCCCATGCAGCTCTCTTGGGTTGTCGAGTAGTGGAAGTGGTGATGCTGCTAGGGCACC
AAAATCGGTGCCAAGGCCTAAAAGATTGACCTCTTCAACCTACAACCTAAGACACGCTCATTCTCTGGGC
TCCTTGGATGCTTCAAAAGTGACTTCAGAAAAGGAAGCTGCACAAGTAAACCCCATAATGCCAAAGGAAA
ATGGAGCTTCAGAGAGTGGAGACCCCCTAGATGAGGACGATGTTGACACCGTGGTAGATGAACAGCCAAA
GTTTATGGAATGGTGTGCTGAGGAGGAGAACCAAGAGCTCATCGCCAACTTCAATGCCCAGTACATGAAA
GTTCAGAAGGGCTGGATCCAGTTGGAGAAAGAAGGACAGCCAACACCAAGAGCAAGGAACAAATCAGATA
AACTGAAAGAGATTTGGAAAAGCAAGAAAAGGTCACGGAAATGTAGGAGTTCATTGGAGAGTCAGAAGTG
TTCTCCTGTTCAGATGCTCTTTATGACAAACTTTAAATTATCTAATGTTTGTAAATGGTTCTTAGAGACA
ACTGAAACCCGGTCTCTAGTCATTGTGAAGAAGCTCAATACTCGCCTTCCAGGAGACGTTCCCCCTGTCA
AGCATCCTCTTCAGAAATACGCTCCTTCCAGCCTATATCCCAGTTCACTACAGGCTGAGCGCTTGAAAAA
GCACTTGAAGAAATTTCCTGGAGCTACCCCTGCTAAGAATAATTGGAAAATGCAGAAGCTCTGGGCCAAA
TTTCGAGAGAATCCTGATCAAGTGGAGCCAGAAGATGGCAGTGATGTCAGCCCCGGCCCTAATTCTGAAG
ACAGCATAGAGGAAGTCAAGGAAGATAGAAACAGTCATCCTCCAGCAAACCTGCCCACTCCAGCCAGTAC
CCGGATTCTTAGAAAATATTCCAATATTCGAGGAAAGCTCAGAGCCCAGCAACGTTTAATCAAGAATGAG
AAAATGGAATGCCCAGATGCTCTGGCTGTGGAAAGTAAGCCAAGTCGTAAGAGCGTATGCATCAACCCTC
TGATGTCCCCCAAGCTTGCCCTGCAAGTGGATGCAGATGGGTTTCCTGTTAAGCCCAAGAGTACTGAAGG
AATGAAGGGAAGGAAGGGGAAGCAGGTGTCTGAAATCTTGCCTAAAGCAGAAGTTCAGAGTAAACGCAAG
AGAACAGAAGGCAGCAGCCCTCCAGATAGTAAGAACAAGGGGCCTACGGTGAAAGCCAGCAAAGAAAAGC
ATGCTGATGGAGCCACCAAAACCCCTGCTGCCAAGAGGCCAGCTGCAAGGGACAGAAGCAGCCAACCCCC
CAAAAAGACGTCTTTGAAAGAGAATAAAGTGAAGATCCCTAAAAAGTCCGCTGGGAAGAGCTGCCCTCCC
TCCAGGAAAGAAAAAGAGAATACAAACAAAAGGCCTTCCCAGTCTATTGCCTCGGAAACACTGACGAAAC
CTGCAAAACAGAAGGGGGCCGGTGAATCCTCTTCAAGGCCTCAGAAAGCCACGAATAGGAAGCAGAGTAG
TGGAAAGACTCGGGCCAGACCCTCAACGAAAACCCCAGAGAGCAGTGCAGCTCAGAGAAAGCGAAAGCTG
AAGGCAAAGCTGGACTGTTCGCACAGCAAACGGAGGCGGCTGGATGCAAAGTGA

Translation (1557 aa):
MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVR
KSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGENSTEAKAVDSNNQSKSPLEKFMVKLCTH
HQKQFIRVLNDLYTESQPGTEDLQPSDSGAMDVSTCNAGCAQLSTKHKEKDALCLDMKSSASVDLFVDSS
DSHSPLHLTEQTPKKPPPEINPVDGRENALTVVQKDSSELPTTKSNSINSSSVDSFTPGYLTASNCSSVN
FHHIPKILEGQTTGQEQDTNVNICEDGKDHMQSSALVESLITVKMAAENSEEGNTCIIPQRNLFKALSEE
AWNSGFMGNSSRTADKENTLQCPKTPLRQDLEANEQDARPKQENHLHSLGRNKVGYHLHPSDKGQFDHSK
DGWLGPGPMPAVHKAANGHSRTKMISTSIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQKSI
LSSRKTARKSTRGYFFNGDCCELPTVRTLARNLHSQEKASCSALASEAVFTPKQTLTIPAPRHTVDVQLP
REDNPEEPSKEITSHEEGGGDVSPRKEPQEPEVCPTKIKPNLSSSPRSEETTASSLVWPLPAHLPEEDLP
EGGSTVSAPTASGMSSPEHNQPPVALLDTEEMSVPQDCHLLPSTESFSGGVSEDVISRPHSPPEIVSREE
SPQCSENQSSPMGLEPPMSLGKAEDNQSISAEVESGDTQELNVDPLLKESSTFTDENPSETEESEAAGGI
GKLEGEDGDVKCLSEKDTYDTSIDSLEENLDKKKKGKKFPEASDRCLRSQLSDSSSADRCLRNQSSDSSS
ACLEIKVPKNPSAKRSKKEGHPGGTTPKGLLPDSFHTETLEDTEKPSVNERPSEKDAEQEGEGGGIITRQ
TLKNMLDKEVKELRGEIFPSRDPITTAGQPLPGERLEIYVQSKMDEKNAHIPSESIACKRDPEQAKEEPG
HIPTQHVEEAVNEVDNENTQQKDDESDAPCSSLGLSSSGSGDAARAPKSVPRPKRLTSSTYNLRHAHSLG
SLDASKVTSEKEAAQVNPIMPKENGASESGDPLDEDDVDTVVDEQPKFMEWCAEEENQELIANFNAQYMK
VQKGWIQLEKEGQPTPRARNKSDKLKEIWKSKKRSRKCRSSLESQKCSPVQMLFMTNFKLSNVCKWFLET
TETRSLVIVKKLNTRLPGDVPPVKHPLQKYAPSSLYPSSLQAERLKKHLKKFPGATPAKNNWKMQKLWAK
FRENPDQVEPEDGSDVSPGPNSEDSIEEVKEDRNSHPPANLPTPASTRILRKYSNIRGKLRAQQRLIKNE
KMECPDALAVESKPSRKSVCINPLMSPKLALQVDADGFPVKPKSTEGMKGRKGKQVSEILPKAEVQSKRK
RTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKTSLKENKVKIPKKSAGKSCPP
SRKEKENTNKRPSQSIASETLTKPAKQKGAGESSSRPQKATNRKQSSGKTRARPSTKTPESSAAQRKRKL
KAKLDCSHSKRRRLDAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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