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Report for CCDS8546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8546.1 Public Homo sapiens 12 TAPBPL 24 110 108 CCDS HistoryNCBI Gene:55080Re-query CCDS DB by CCDS ID:8546.1Re-query CCDS DB by GeneID:55080See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266556.8 ENSP00000266556.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266556.8Link to Ensembl Protein Viewer:ENSP00000266556.7Re-query CCDS DB by Nucleotide ID:ENST00000266556Re-query CCDS DB by Protein ID:ENSP00000266556
Original member Current member NCBI NM_018009.5 NP_060479.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018009.5Link to Protein Sequence:NP_060479.3Re-query CCDS DB by Nucleotide ID:NM_018009Re-query CCDS DB by Protein ID:NP_060479Link to BLAST:NP_060479.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060479.3 468 Q9BX59-1 468 100% 0 0

Chromosomal Locations for CCDS 8546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6452249 6452312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6453067 6453297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6453447 6453716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6457406 6457744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6458645 6458947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6460855 6460938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6462034 6462149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGGCACACAGGAGGGCTGGTGCCTGCTGCTCTGCCTGGCTCTATCTGGAGCAGCAGAAACCAAGCCCC
ACCCAGCAGAGGGGCAGTGGCGGGCAGTGGACGTGGTCCTAGACTGCTTCCTGGCGAAGGACGGTGCGCA
CCGTGGAGCTCTCGCCAGCAGTGAGGACAGGGCAAGGGCCTCCCTTGTGCTGAAGCAGGTGCCAGTGCTG
GACGATGGCTCCCTGGAGGACTTCACCGATTTCCAAGGGGGCACACTGGCCCAAGATGACCCACCTATTA
TCTTTGAGGCCTCAGTGGACCTGGTCCAGATTCCCCAGGCCGAGGCCTTGCTCCATGCTGACTGCAGTGG
GAAGGAGGTGACCTGTGAGATCTCCCGCTACTTTCTCCAGATGACAGAGACCACTGTTAAGACAGCAGCT
TGGTTCATGGCCAACATGCAGGTCTCTGGAGGGGGACCTAGCATCTCCTTGGTGATGAAGACTCCCAGGG
TCACCAAGAATGAGGCGCTCTGGCACCCGACGCTGAACTTGCCACTGAGCCCCCAGGGGACTGTGCGAAC
TGCAGTGGAGTTCCAGGTGATGACACAGACCCAATCCCTGAGCTTCCTGCTGGGGTCCTCAGCCTCCTTG
GACTGTGGCTTCTCCATGGCACCGGGCTTGGACCTCATCAGTGTGGAGTGGCGACTGCAGCACAAGGGCA
GGGGTCAGTTGGTGTACAGCTGGACCGCAGGGCAGGGGCAGGCTGTGCGGAAGGGCGCTACCCTGGAGCC
TGCACAACTGGGCATGGCCAGGGATGCCTCCCTCACCCTGCCCGGCCTCACTATACAGGACGAGGGGACC
TACATTTGCCAGATCACCACCTCTCTGTACCGAGCTCAGCAGATCATCCAGCTCAACATCCAAGCTTCCC
CTAAAGTACGACTGAGCTTGGCAAACGAAGCTCTGCTGCCCACCCTCATCTGCGACATTGCTGGCTATTA
CCCTCTGGATGTGGTGGTGACGTGGACCCGAGAGGAGCTGGGTGGATCCCCAGCCCAAGTCTCTGGTGCC
TCCTTCTCCAGCCTCAGGCAAAGCGTGGCAGGCACCTACAGCATCTCCTCCTCTCTCACCGCAGAACCTG
GCTCTGCAGGTGCCACTTACACCTGCCAGGTCACACACATCTCTCTGGAGGAGCCCCTTGGGGCCAGCAC
CCAGGTTGTCCCACCAGAGCGGAGAACAGCCTTGGGAGTCATCTTTGCCAGCAGTCTCTTCCTTCTTGCA
CTGATGTTCCTGGGGCTTCAGAGACGGCAAGCACCTACAGGACTTGGGCTGCTTCAGGCTGAACGCTGGG
AGACCACTTCCTGTGCTGACACACAGAGCTCCCATCTCCATGAAGACCGCACAGCGCGTGTAAGCCAGCC
CAGCTGA

Translation (468 aa):
MGTQEGWCLLLCLALSGAAETKPHPAEGQWRAVDVVLDCFLAKDGAHRGALASSEDRARASLVLKQVPVL
DDGSLEDFTDFQGGTLAQDDPPIIFEASVDLVQIPQAEALLHADCSGKEVTCEISRYFLQMTETTVKTAA
WFMANMQVSGGGPSISLVMKTPRVTKNEALWHPTLNLPLSPQGTVRTAVEFQVMTQTQSLSFLLGSSASL
DCGFSMAPGLDLISVEWRLQHKGRGQLVYSWTAGQGQAVRKGATLEPAQLGMARDASLTLPGLTIQDEGT
YICQITTSLYRAQQIIQLNIQASPKVRLSLANEALLPTLICDIAGYYPLDVVVTWTREELGGSPAQVSGA
SFSSLRQSVAGTYSISSSLTAEPGSAGATYTCQVTHISLEEPLGASTQVVPPERRTALGVIFASSLFLLA
LMFLGLQRRQAPTGLGLLQAERWETTSCADTQSSHLHEDRTARVSQPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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