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Report for CCDS83488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83488.1 Public Homo sapiens X TEX13C 24 110 108 CCDS HistoryNCBI Gene:100129520Re-query CCDS DB by CCDS ID:83488.1Re-query CCDS DB by GeneID:100129520See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 83488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000632600.2 ENSP00000488022.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000632600.2Link to Ensembl Protein Viewer:ENSP00000488022.1Re-query CCDS DB by Nucleotide ID:ENST00000632600Re-query CCDS DB by Protein ID:ENSP00000488022
Original member Current member EBI ENST00000695840.1 ENSP00000512212.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695840.1Link to Ensembl Protein Viewer:ENSP00000512212.1Re-query CCDS DB by Nucleotide ID:ENST00000695840Re-query CCDS DB by Protein ID:ENSP00000512212
Original member Current member EBI ENST00000695841.1 ENSP00000512213.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695841.1Link to Ensembl Protein Viewer:ENSP00000512213.1Re-query CCDS DB by Nucleotide ID:ENST00000695841Re-query CCDS DB by Protein ID:ENSP00000512213
Original member Current member NCBI NM_001195272.2 NP_001182201.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195272.2Link to Protein Sequence:NP_001182201.1Re-query CCDS DB by Nucleotide ID:NM_001195272Re-query CCDS DB by Protein ID:NP_001182201Link to BLAST:NP_001182201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182201.1 993 A0A0J9YWL9 993 100% 0 0

Chromosomal Locations for CCDS 83488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 125320120 125323101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGGCGATGAACTTTGGGGACCATGCCAGCGGGTTCCGCCATGATGATGTGATCAGGTTCATCAACAATG
AAGTCCTCAGGAACGGCGGCAGCCCAGCCTTTTACACGGCCTTCCGCTCGCGGCCGTGGAACGAGGTAGA
GGACCGGCTTCGGGCCATTGTGGCCGACCCGCGGGTGCCCCGTGCCATTAAGAGGGCCTGTACCTGGAGC
GCTTTGGCGCTGAGTGTGCAAGTGGCTGCGAGGCAGCAGGAGGAGCTGCTGTACCAGGTTTGGTGGCTGC
AAGGGCATGTGGAGGAGTGCCAGGCGACCTCCTGGGCTCTAACTTCCCAGCTGCAGCAGCTGCGCCTGGA
GCATGAGGAGGTGGCAACACAGCTGCACCTCACGCAGGCCGCCCTGCAGCAGGTGCTGAATGAGCGTGAT
GGGTTATGCGGGAGGCTGCTAGAAGTTGAGAGATCCATGCAGGTCTATCCGATGCCTCAGGATTTTGTAC
CCGGTCCAGAAGCCGGCCAGTATGGGCCTGTGGCCGGGACTTTAAATGCAGAACAGAGTGAGGCGGTGGC
CACAGAGGCACAGGGAATGCCACATTCGGAAGCCCAGGTAGCAGCCCCAACAGCTGTGTATTACATGCCT
GAACCCCAGAGTGGCAGGGTCCAGGGCATGCAACCTCTTCTGCTAATGCAGGCACCTCATCCAGTCCCAT
TCCATATGCCTTCACCAATGGGACTGCCATACTCAACACCTCTACCACCCCCAGTAGTAATGGAATCAGC
AGCAGCAATTGCACCACAGATGCCTCCTGCAGGGATCTATCCACCTGGTCTTTGGGCCACAGTGGGATCC
CAGGAGGAGACGGCCCCTCCGTGGGACCAGAAGTGCCATGGCCAGGATGGATATCCTGAGAATTTCCAGG
GAGTATATCACCCAGGAGATAACAGAAGCTGCAACCAAAAGGAAGGTTCTGAGTGTCCCCAAGGAATGAC
TTCCCAAGGGGACAGCAGCAGCCACAGCCTGAAGAAAGATCCAGTGATGCAAGAGGGCACAGCTCCCCCA
GAGTTTAGCAGGAGCCACAGCCTGGAGAAAAAACCAGTGATGCCCAAGGAGATGGTCCCCCTAGGGGACA
GCAACAGCCACAGCCTGAAGAAAGATCCAGTTGTGCCCAAGGAGATTGTCCCCATAGGGGACAGCAACAG
CCACAGCCTGACGAAAAATCCAGTTGTGCACAAGGAGATGGTCTCCCTGGGGGACAGCAACAGCCACAGC
ATGAAGAAAGATCCAGTGATGCCCCAGAAGATGGTCCCCCTGGGGGACAGCAACAGCCACAGTCTGAAGA
AAGATCCAATGATGTGCCAGGAGATGGTCCCCCTGGGGGACAGCAACAGCCATAGCCTGAAGAAAGATCC
AGTGGTGGCCCAGGGCACAGCTCCCCTGATGTATAGCAGGAGGCACAGCCAGAAGAAAGTGCCAATGATG
CCCAAGGAGATGGTCCCCCTGGGGGAAAGCCACAGCCACAGCCTGAAGAAAGATCTAGTTGTGCCCAAGG
AGCTGGTCCCCCTGGGGGACAGCAAGAGTCACAGGATGAAGAAAGATCCAGTGATGCCCCAGAAGATGGT
CCCCCTGGGGGACAGCAGAAGCCACAGCCTGAAGAAAGATCCAGTGATGCCCCAGAACATGATCCCCCTG
GAGGACAGCAACAGCCACAGCCTGAAGAAAGATCCAGTGATGCCCCAGAACATGATCCCCCTGGAGGACA
GCAACAGCCACAGTCTGAAGAAAGATCCAATGATGCACCAGGAGATGGTCCCCCTGGGGGACAGCAACAG
CCATAGCCTGAAGAAAGATCCAGTGGTGCCCCAGGACACAGCTCCCCTGATGTTTAGCAGGAGACACAGC
CTGAAGAAAGTGCCAGTGATGCCCAAGGAGATGGTCCCCCTGGGGGACAGCCACAGCCTGAAGAAAGATC
CAGTGATGCCCCAGAACATGGTCCCCCTGGAGGACAGCAACAGCCATAGCCTGAAGAAAGATCCAGTGGT
GCCCCAGGGCACAGCTCCCCTGATGTTTAGCAGGAGACACAGCCTGAAGAAAGTGCCAGTGATGCCCAAG
GAGATGGTCCCCCTGGGGGACAGCAACAGCCATAGCCTGAAGAAAGATCCAGTGGTGCCCCAGGGCACAG
CTCCCCTGATGTTTAGCAGGAGACACAGCCTGAAGAAAGTGCCAGTGATGCCCAAGGAGATGGTCCCCCT
GGGGGACAGCCACAGCCTGAAGAAAGATCCAGTGATGCCCCAGAACATGGTCCCCCTGGAGGACAGCAAC
AGCCATAGCCTGAAGAAAGATCCAGTGGTGCCCCAGGGCACAGCTCCCCTGACGTTTAGCAGGAGACACA
GCCTGAAGAAAGTGCCAGTGGTGCCCCAGGGGACAGCCTCCCTGGGGTTCAGCAGAATCCACAGCCTGAA
GAAAGAGTTAGTGATGCCCGAGGAGATGGTCCCCCTGGGGGACAGCAACAGCCACAGCATGAAGAAAGAT
CTAGTGATGCCCAAGGAGATGGTCCCCCTAGGGGACAGCAACAGTCACAGCCTGAAGAAAGATCCAGTGG
TGCACCAGGAGGTGGTCTCCTTGGGGGACAGCAACAGCCACAGCCTGAAGAAACATCCAGTGATTCCCCA
GGGCACAGCCTCACTGAGGTTTAGCAAGAGCCACAGCCAGAAGGAAGATCAGGAGAGGCCCCAGGTAACC
CCTCTGGAGGATAGCAAGAGCCATGGTGTGAAAAATAGCCCATGGAAACACCAGCCTCAGGGGCAGAAGG
TCAAGGAACAAAAAAGGAAAAAGGCCTCAGAATCCCAGCAACAGAAGCCTGCCTCATGCTCCAGCCCAGT
GAATTGGGCCTGCCCATGGTGTAATGCCATGAATTTTCCACGGAACAAGGTGTGCTCTAAATGCAAGAGA
GTCCGTATGCCAGTTGAGAATGGCAGCGTTGACCCAGCGTAA

Translation (993 aa):
MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVPRAIKRACTWS
ALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLRLEHEEVATQLHLTQAALQQVLNERD
GLCGRLLEVERSMQVYPMPQDFVPGPEAGQYGPVAGTLNAEQSEAVATEAQGMPHSEAQVAAPTAVYYMP
EPQSGRVQGMQPLLLMQAPHPVPFHMPSPMGLPYSTPLPPPVVMESAAAIAPQMPPAGIYPPGLWATVGS
QEETAPPWDQKCHGQDGYPENFQGVYHPGDNRSCNQKEGSECPQGMTSQGDSSSHSLKKDPVMQEGTAPP
EFSRSHSLEKKPVMPKEMVPLGDSNSHSLKKDPVVPKEIVPIGDSNSHSLTKNPVVHKEMVSLGDSNSHS
MKKDPVMPQKMVPLGDSNSHSLKKDPMMCQEMVPLGDSNSHSLKKDPVVAQGTAPLMYSRRHSQKKVPMM
PKEMVPLGESHSHSLKKDLVVPKELVPLGDSKSHRMKKDPVMPQKMVPLGDSRSHSLKKDPVMPQNMIPL
EDSNSHSLKKDPVMPQNMIPLEDSNSHSLKKDPMMHQEMVPLGDSNSHSLKKDPVVPQDTAPLMFSRRHS
LKKVPVMPKEMVPLGDSHSLKKDPVMPQNMVPLEDSNSHSLKKDPVVPQGTAPLMFSRRHSLKKVPVMPK
EMVPLGDSNSHSLKKDPVVPQGTAPLMFSRRHSLKKVPVMPKEMVPLGDSHSLKKDPVMPQNMVPLEDSN
SHSLKKDPVVPQGTAPLTFSRRHSLKKVPVVPQGTASLGFSRIHSLKKELVMPEEMVPLGDSNSHSMKKD
LVMPKEMVPLGDSNSHSLKKDPVVHQEVVSLGDSNSHSLKKHPVIPQGTASLRFSKSHSQKEDQERPQVT
PLEDSKSHGVKNSPWKHQPQGQKVKEQKRKKASESQQQKPASCSSPVNWACPWCNAMNFPRNKVCSKCKR
VRMPVENGSVDPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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