NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS83029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83029.1 Public Homo sapiens 5 LARS1 24 110 108 CCDS HistoryNCBI Gene:51520Re-query CCDS DB by CCDS ID:83029.1Re-query CCDS DB by GeneID:51520See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510191.5 ENSP00000426005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510191.5Link to Ensembl Protein Viewer:ENSP00000426005.1Re-query CCDS DB by Nucleotide ID:ENST00000510191Re-query CCDS DB by Protein ID:ENSP00000426005
Original member Current member EBI ENST00000674174.1 ENSP00000501434.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674174.1Link to Ensembl Protein Viewer:ENSP00000501434.1Re-query CCDS DB by Nucleotide ID:ENST00000674174Re-query CCDS DB by Protein ID:ENSP00000501434
Original member Current member NCBI NM_001317965.2 NP_001304894.1 Accepted alive Link to Nucleotide Sequence:NM_001317965.2Link to Protein Sequence:NP_001304894.1Re-query CCDS DB by Nucleotide ID:NM_001317965Re-query CCDS DB by Protein ID:NP_001304894Link to BLAST:NP_001304894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304894.1 1122 Q9P2J5-2 1122 100% 0 0

Chromosomal Locations for CCDS 83029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146114106 146114311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146120371 146120503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146122492 146122587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146123982 146124086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146126435 146126545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146128672 146128782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146128978 146129118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146130018 146130158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146131019 146131109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146132898 146133081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146135601 146135664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146140204 146140261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146142872 146143084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146143412 146143550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146144267 146144349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146144472 146144537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146144624 146144709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146149622 146149699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146151862 146152002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146153174 146153227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146153734 146153810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146153893 146153980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146157403 146157628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146157728 146157795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146159407 146159470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146160374 146160486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146164310 146164471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146168128 146168265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146171910 146171990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146172687 146172737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3369 nt):
ATGAATGGACGCCTTCATTTGGGACACACGTTTTCTTTATCCAAATGTGAGTTTGCTGTAGGGTACCAGC
GATTGAAAGGAAAATGTTGTCTGTTTCCCTTTGGCCTGCACTGTACTGGAATGCCTATTAAGGCATGTGC
TGATAAGTTGAAAAGAGAAATAGAGCTGTATGGTTGCCCCCCTGATTTTCCAGATGAAGAAGAGGAAGAG
GAAGAAACCAGTGTTAAAACAGAAGATATAATAATTAAGGATAAAGCTAAAGGAAAAAAGAGTAAAGCTG
CTGCTAAAGCTGGATCTTCTAAATACCAGTGGGGCATTATGAAATCCCTTGGCCTGTCTGATGAAGAGAT
AGTAAAATTTTCTGAAGCAGAACATTGGCTTGATTATTTCCCGCCACTGGCTATTCAGGATTTAAAAAGA
ATGGGTTTGAAGGTAGACTGGCGTCGTTCCTTCATCACCACTGATGTTAATCCTTACTATGATTCATTTG
TCAGATGGCAATTTTTAACATTAAGAGAAAGAAACAAAATTAAATTTGGGAAGCGGTATACAATTTACTC
TCCGAAAGATGGACAGCCTTGCATGGATCATGATAGACAAACTGGAGAGGGTGTTGGACCTCAGGAATAT
ACTTTACTCAAATTGAAGGTGCTTGAGCCATACCCATCTAAATTAAGTGGCCTGAAAGGTAAAAATATTT
TCTTGGTGGCTGCTACTCTCAGACCTGAGACCATGTTTGGGCAGACAAATTGTTGGGTTCGTCCTGATAT
GAAGTACATTGGATTTGAGACGGTGAATGGTGATATATTCATCTGTACCCAAAAAGCAGCCAGGAATATG
TCATACCAGGGCTTTACCAAAGACAATGGCGTGGTGCCTGTTGTTAAGGAATTAATGGGGGAGGAAATTC
TTGGTGCATCACTTTCTGCACCTTTAACATCATACAAGGTGATCTATGTTCTCCCAATGCTAACTATTAA
GGAGGATAAAGGCACTGGTGTGGTTACAAGTGTTCCTTCCGACTCCCCTGATGATATTGCTGCCCTCAGA
GACTTGAAGAAAAAGCAAGCCTTACGAGCAAAATATGGAATTAGAGATGACATGGTCTTGCCATTTGAGC
CGGTGCCAGTCATTGAAATCCCAGGTTTTGGAAATCTTTCTGCTGTAACCATTTGTGATGAGTTGAAAAT
TCAGAGCCAGAATGACCGGGAAAAACTTGCAGAAGCAAAGGAGAAGATATATCTAAAAGGATTTTATGAG
GGTATCATGTTGGTGGATGGATTTAAAGGACAGAAGGTTCAAGATGTAAAGAAGACTATTCAGAAAAAGA
TGATTGACGCTGGAGATGCACTTATTTACATGGAACCAGAGAAACAAGTGATGTCCAGGTCGTCAGATGA
ATGTGTTGTGGCTCTGTGTGACCAGTGGTACTTGGATTATGGAGAAGAGAATTGGAAGAAACAGACATCT
CAGTGCTTGAAGAACCTGGAAACATTCTGTGAGGAGACCAGGAGGAATTTTGAAGCCACCTTAGGTTGGC
TACAAGAACATGCTTGCTCAAGAACTTATGGTCTAGGCACTCACCTGCCTTGGGATGAGCAGTGGCTGAT
TGAATCACTTTCTGACTCCACTATTTACATGGCATTTTACACAGTTGCACACCTATTGCAGGGGGGTAAC
TTGCATGGACAGGCAGAGTCTCCGCTGGGCATTAGACCGCAACAGATGACCAAGGAAGTTTGGGATTATG
TTTTCTTCAAGGAGGCTCCATTTCCTAAGACTCAGATTGCAAAGGAAAAATTAGATCAGTTAAAGCAGGA
GTTTGAATTCTGGTATCCTGTTGATCTTCGCGTCTCTGGCAAGGATCTTGTTCCAAATCATCTTTCATAT
TACCTTTATAATCATGTGGCTATGTGGCCGGAACAAAGTGACAAATGGCCTACAGCTGTGAGAGCAAATG
GACATCTCCTCCTGAACTCTGAGAAGATGTCAAAATCCACAGGCAACTTCCTCACTTTGACCCAAGCTAT
TGACAAATTTTCAGCAGATGGAATGCGTTTGGCTCTGGCTGATGCTGGTGACACTGTAGAAGATGCCAAC
TTTGTGGAAGCCATGGCAGATGCAGGTATTCTCCGTCTGTACACCTGGGTAGAGTGGGTGAAAGAAATGG
TTGCCAACTGGGACAGCCTAAGAAGTGGTCCTGCCAGCACTTTCAATGATAGAGTTTTTGCCAGTGAATT
GAATGCAGGAATTATAAAAACAGATCAAAACTATGAAAAGATGATGTTTAAAGAAGCTTTGAAAACAGGG
TTTTTTGAGTTTCAGGCCGCAAAAGATAAGTACCGTGAATTGGCTGTGGAAGGGATGCACAGAGAACTTG
TGTTCCGGTTTATTGAAGTTCAGACACTTCTCCTCGCTCCATTCTGTCCACATTTGTGTGAGCACATCTG
GACACTCCTGGGAAAGCCTGACTCAATTATGAATGCTTCATGGCCTGTGGCAGGTCCTGTTAATGAAGTT
TTAATACACTCCTCACAGTATCTTATGGAAGTAACACATGACCTTAGACTACGACTCAAGAACTATATGA
TGCCAGCTAAAGGGAAGAAGACTGACAAACAACCCCTGCAGAAGCCCTCACATTGCACCATCTATGTGGC
AAAGAACTATCCACCTTGGCAACATACCACCCTGTCTGTTCTACGTAAACACTTTGAGGCCAATAACGGA
AAACTGCCTGACAACAAAGTCATTGCTAGTGAACTAGGCAGTATGCCAGAACTGAAGAAATACATGAAGA
AAGTCATGCCATTTGTTGCCATGATTAAGGAAAATCTGGAGAAGATGGGGCCTCGTATTCTGGATTTGCA
ATTAGAATTTGATGAAAAGGCTGTGCTTATGGAGAATATAGTCTATCTGACTAATTCGCTTGAGCTAGAA
CACATAGAAGTCAAGTTTGCCTCCGAAGCAGAAGATAAAATCAGGGAAGACTGCTGTCCTGGGAAACCAC
TTAATGTTTTTAGAATAGAACCTGGTGTGTCCGTTTCTCTGGTGAATCCCCAGCCATCCAATGGCCACTT
CTCAACCAAAATTGAAATCAGGCAAGGAGATAACTGTGATTCCATAATCAGGCGTTTAATGAAAATGAAT
CGAGGAATTAAAGACCTTTCCAAAGTGAAACTGATGAGATTTGATGATCCACTGTTGGGGCCTCGACGAG
TTCCTGTCCTGGGAAAGGAGTACACCGAGAAGACCCCCATTTCTGAGCATGCTGTTTTCAATGTGGACCT
CATGAGCAAGAAAATTCATCTGACTGAGAATGGGATAAGGGTGGATATTGGCGATACAATAATCTATCTG
GTTCATTAA

Translation (1122 aa):
MNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEE
EETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKR
MGLKVDWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEY
TLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNM
SYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALR
DLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYE
GIMLVDGFKGQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQTS
QCLKNLETFCEETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGN
LHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSY
YLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDAN
FVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTG
FFEFQAAKDKYRELAVEGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSIMNASWPVAGPVNEV
LIHSSQYLMEVTHDLRLRLKNYMMPAKGKKTDKQPLQKPSHCTIYVAKNYPPWQHTTLSVLRKHFEANNG
KLPDNKVIASELGSMPELKKYMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELE
HIEVKFASEAEDKIREDCCPGKPLNVFRIEPGVSVSLVNPQPSNGHFSTKIEIRQGDNCDSIIRRLMKMN
RGIKDLSKVKLMRFDDPLLGPRRVPVLGKEYTEKTPISEHAVFNVDLMSKKIHLTENGIRVDIGDTIIYL
VH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH