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Report for CCDS82963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82963.1 Public Homo sapiens 4 SLC10A7 24 110 108 CCDS HistoryNCBI Gene:84068Re-query CCDS DB by CCDS ID:82963.1Re-query CCDS DB by GeneID:84068See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432059.6 ENSP00000411297.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432059.6Link to Ensembl Protein Viewer:ENSP00000411297.2Re-query CCDS DB by Nucleotide ID:ENST00000432059Re-query CCDS DB by Protein ID:ENSP00000411297
Original member Current member NCBI NM_001317816.2 NP_001304745.1 Accepted alive Link to Nucleotide Sequence:NM_001317816.2Link to Protein Sequence:NP_001304745.1Re-query CCDS DB by Nucleotide ID:NM_001317816Re-query CCDS DB by Protein ID:NP_001304745Link to BLAST:NP_001304745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304745.1 327 Q0GE19-3 327 100% 0 0

Chromosomal Locations for CCDS 82963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 146256491 146256520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146258692 146258837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146283192 146283265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146292929 146292980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146293930 146294095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146305926 146306009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146325961 146325996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146503849 146503924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146509913 146510049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146517038 146517120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146521618 146521717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGAGGCTGCTGGAGAGAATGAGGAAAGACTGGTTCATGGTCGGAATAGTGCTGGCGATCGCTGGAGCTA
AACTGGAGCCGTCCATAGGGGTGAATGGGGGACCACTGAAGCCAGAAATAACTGTATCCTACATTGCTGT
TGCAACAATATTCTTTAACAGTGGACTATCATTGAAAACAGAGGAGCTGACCAGTGCTTTGGTGCATCTA
AAACTGCATCTTTTTATTCAGATCTTTACTCTTGCATTCTTCCCAGCAACAATATGGCTTTTTCTTCAGC
TTTTATCAATCACACCCATCAACGAATGGCTTTTAAAAGGTTTGCAGACAGTAGGTTGCATGCCTCCGCC
TGTGTCTTCTGCAGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGGCATCGTTATAACACCCCTGCTC
CTGCTGCTTTTTCTTGGTTCATCTTCTTCTGTGCCTTTCACATCTATTTTTTCTCAGCTTTTTATGACTG
TTGTGGTTCCTCTCATCATTGGACAGATTGTCCGAAGATACATCAAGGATTGGCTTGAGAGAAAGAAGCC
TCCTTTTGGTGCTATCAGCAGCAGTGTACTCCTCATGATCATCTACACAACATTCTGTGACACGTTCTCT
AACCCAAATATTGACCTGGATAAATTCAGCCTTGTTCTCATACTGTTCATAATATTTTCTATCCAGCTGA
GTTTTATGCTTTTAACTTTCATCTTTTCAACAAGGAATAATTCGGGTTTCACACCAGCAGACACAGTGGC
TATCATTTTCTGTTCTACACACAAATCCCTTACATTGGGAATTCCGATGCTGAAGATCGTGTTTGCAGGC
CATGAGCATCTCTCTTTAATATCTGTACCCTTGCTCATCTACCACCCAGCTCAGATCCTTCTGGGAAGTG
TGTTGGTGCCAACAATCAAGTCTTGGATGGTATCAAGGCAGAAGGGAGTGAAGCTGACAAGGCCGACAGT
ATAA

Translation (327 aa):
MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHL
KLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEGIVITPLL
LLLFLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYIKDWLERKKPPFGAISSSVLLMIIYTTFCDTFS
NPNIDLDKFSLVLILFIIFSIQLSFMLLTFIFSTRNNSGFTPADTVAIIFCSTHKSLTLGIPMLKIVFAG
HEHLSLISVPLLIYHPAQILLGSVLVPTIKSWMVSRQKGVKLTRPTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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