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Report for CCDS82238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82238.1 Public Homo sapiens 18 L3MBTL4 24 110 108 CCDS HistoryNCBI Gene:91133Re-query CCDS DB by CCDS ID:82238.1Re-query CCDS DB by GeneID:91133See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317931.12 ENSP00000318543.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317931.12Link to Ensembl Protein Viewer:ENSP00000318543.7Re-query CCDS DB by Nucleotide ID:ENST00000317931Re-query CCDS DB by Protein ID:ENSP00000318543
Original member Current member NCBI NM_001330559.2 NP_001317488.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330559.2Link to Protein Sequence:NP_001317488.1Re-query CCDS DB by Nucleotide ID:NM_001330559Re-query CCDS DB by Protein ID:NP_001317488Link to BLAST:NP_001317488.1
Original member Current member NCBI NM_001365765.2 NP_001352694.1 Accepted alive Link to Nucleotide Sequence:NM_001365765.2Link to Protein Sequence:NP_001352694.1Re-query CCDS DB by Nucleotide ID:NM_001365765Re-query CCDS DB by Protein ID:NP_001352694Link to BLAST:NP_001352694.1

Chromosomal Locations for CCDS 82238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 5956220 5956387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5960094 5960156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5969393 5969562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6080881 6080951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6093355 6093528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6138194 6138296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6171828 6171942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6213149 6213259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6215750 6215835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6237964 6238040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6239718 6239872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6241358 6241449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6243294 6243429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6244484 6244588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6263947 6264038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6301903 6301957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6311554 6311625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGAAACAGCCCAACAGGAAAAGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCT
TGGAGCAAGCTGAAGAGGAAAAGAAGCCCAAGGATAGCACAACCCCTTTGAGTCACGTCCCTTCAGCGGC
TGCACAGGGAGCATGGTCTTGGGAGTGGTACTTGAAAGAACAGAAGGCTGTCGCAGCACCTGTTGAGCTG
TTTTCCAAGGATCAGTCCTTTCCAGAGCATGAAAATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTG
ATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGTAGCGGAGGTTTGTGGTTACCGTCTAAGACTTCA
TTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATGCTGGTTCCCCTGACATTCATCCAGTAGGA
TGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTATAGAAAAGATAAATTTGTTTGGATGG
ATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAGAAACAGAAGTCCTAATGGGCC
AATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGAACCCTTCCTTGGTGTGT
GTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGGGATGATAGTTACG
ATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGGAAGAACTCT
GATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTCAAACC
AATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAAG
TTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAA
GGTTCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCG
ATCGGATGGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTC
CAGGTCAAGCTGTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGG
ACATCACAGTGCTTTTGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGT
TTGAGAGAACAAACACAGGCAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTT
TGAACTTCAATGGAAAACATGAAAAGGTGAACAGTCAGCCCAGACTTGTACAGCAGGCAAAGTGTTTGAA
AATCAAAGGAAAAGAAGATATTGACTTGGATAATCTCTTCAGAGAATACTCGGTGGAGCAGGCGCAGCAG
GTGCTTCACCAGTCAGTGTCCATGTCCACGGTGTCAGCCCACCCTTTTCGGGACCTTCCCCTCGGCAGGG
AGCAACACTGCAAGTTGCTTCCAGGCGTGGCTGACATCCGGGCCAGCCAAGTGGCACGTTGGACTGTGGA
TGAGGTGGCTGAGTTTGTACAGTCTCTTCTGGGCTGTGAAGAGCATGCCAAGTGCTTTAAGAAAGAGCAG
ATCGATGGCAAAGCCTTCCTGCTTCTGACACAGACGGACATTGTCAAAGTGATGAAGATCAAACTGGGCC
CAGCACTGAAGATTTACAACTCTATCCTGATGTTCAGGCATTCCCAGGAACTCCCTGAAGAAGATATTGC
CTCAGGCCAAGAAGTCAGGGGATGA

Translation (614 aa):
MKQPNRKRKLNMDSKERLDQDGRLEQAEEEKKPKDSTTPLSHVPSAAAQGAWSWEWYLKEQKAVAAPVEL
FSKDQSFPEHENGFQIGMRLEGIDPRHPSVFCVLSVAEVCGYRLRLHFDGYLSCYDFWTNAGSPDIHPVG
WCEKTKHELHIPKGYRKDKFVWMDYLKACKLQNAPKKLFRNRSPNGPMSKEFQVGMKLEAVDRKNPSLVC
VATIADIVEDRLLVHFDNWDDSYDYWCDVNSPYVQPVGWCQENGRTLIAPQGYPNPENFSWTEYLEATQT
NAVPAKVFKMRLPHGFLPNMKLEVVDKRNPRLIRVATIVDVDDQRVKVHFDGWDHKYDYWVEADSPDIHP
IGWCDVTGHPLEVPQRTNDLKILPGQAVCPTPGCRGIGHIRGPRYSGHHSAFGCPYSDMNLKKEATLHDR
LREQTQANLESDSSHSKSKSLCSLNFNGKHEKVNSQPRLVQQAKCLKIKGKEDIDLDNLFREYSVEQAQQ
VLHQSVSMSTVSAHPFRDLPLGREQHCKLLPGVADIRASQVARWTVDEVAEFVQSLLGCEEHAKCFKKEQ
IDGKAFLLLTQTDIVKVMKIKLGPALKIYNSILMFRHSQELPEEDIASGQEVRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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