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Report for CCDS81939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81939.1 Public Homo sapiens 16 NAA60 24 110 108 CCDS HistoryNCBI Gene:79903Re-query CCDS DB by CCDS ID:81939.1Re-query CCDS DB by GeneID:79903See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 81939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000570819.5 ENSP00000460763.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570819.5Link to Ensembl Protein Viewer:ENSP00000460763.1Re-query CCDS DB by Nucleotide ID:ENST00000570819Re-query CCDS DB by Protein ID:ENSP00000460763
Original member Current member EBI ENST00000572942.5 ENSP00000461730.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572942.5Link to Ensembl Protein Viewer:ENSP00000461730.1Re-query CCDS DB by Nucleotide ID:ENST00000572942Re-query CCDS DB by Protein ID:ENSP00000461730
Original member Current member NCBI NM_001317097.2 NP_001304026.1 Accepted alive Link to Nucleotide Sequence:NM_001317097.2Link to Protein Sequence:NP_001304026.1Re-query CCDS DB by Nucleotide ID:NM_001317097Re-query CCDS DB by Protein ID:NP_001304026Link to BLAST:NP_001304026.1
Original member Current member NCBI NM_001317098.2 NP_001304027.1 Accepted alive Link to Nucleotide Sequence:NM_001317098.2Link to Protein Sequence:NP_001304027.1Re-query CCDS DB by Nucleotide ID:NM_001317098Re-query CCDS DB by Protein ID:NP_001304027Link to BLAST:NP_001304027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304026.1 179 Q9H7X0-4 179 100% 0 0
NP_001304027.1 179 Q9H7X0-4 179 100% 0 0

Chromosomal Locations for CCDS 81939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3476228 3476337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3479471 3479600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3482502 3482598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3484762 3484964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGACAGAGGTGGTGCCATCCAGCGCGCTCAGCGAGGTCAGCCTGCGCCTCCTCTGCCACGATGACATAG
ACACTGTGAAGCACCTGTGTGGCGACTGGTTCCCCATCGAGTACCCAGACTCATGGTATCGTGATATCAC
ATCCAACAAGAAGTTCTTTTCCCTTGCTGCAACCTACAGAGGTGCCATTGTGGGAATGATAGTAGCTGAA
ATTAAGAACAGGACCAAAATACATAAAGAGGATGGAGATATTCTAGCATCCAACTTCTCTGTTGACACAC
AAGTCGCGTACATCCTAAGTCTGGGCGTCGTGAAAGAGTTCAGGAAGCACGGCATAGAGTCTACCGCCAG
GCCCACAGCCTGCTCTGCAGCTTCCTGCCATGGTCGGGCATCTCTTCCAAGAGTGGCATCGAGTACAGCC
GGACCATGTGATGTCGGCTGGGCAGCCGCCACCAGGCCCCACCCTTCGGCCGCCCGCAGAGCCCGCCTTC
CTGTCCATCTGACCCCTTCTGTTTTCTGCAAGGAGCTGCCAGCCATCTAA

Translation (179 aa):
MTEVVPSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSWYRDITSNKKFFSLAATYRGAIVGMIVAE
IKNRTKIHKEDGDILASNFSVDTQVAYILSLGVVKEFRKHGIESTARPTACSAASCHGRASLPRVASSTA
GPCDVGWAAATRPHPSAARRARLPVHLTPSVFCKELPAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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