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Report for CCDS81646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81646.1 Public Homo sapiens 11 DDX25 24 110 108 CCDS HistoryNCBI Gene:29118Re-query CCDS DB by CCDS ID:81646.1Re-query CCDS DB by GeneID:29118See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525943.1 ENSP00000490224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525943.1Link to Ensembl Protein Viewer:ENSP00000490224.1Re-query CCDS DB by Nucleotide ID:ENST00000525943Re-query CCDS DB by Protein ID:ENSP00000490224
Original member Current member NCBI NM_001330438.2 NP_001317367.1 Accepted alive Link to Nucleotide Sequence:NM_001330438.2Link to Protein Sequence:NP_001317367.1Re-query CCDS DB by Nucleotide ID:NM_001330438Re-query CCDS DB by Protein ID:NP_001317367Link to BLAST:NP_001317367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317367.1 369 Q9UHL0-2 369 100% 0 0

Chromosomal Locations for CCDS 81646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 125908227 125908288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125908401 125908503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125910364 125910478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125911311 125911488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125917014 125917251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125918628 125918790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125921191 125921379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125922820 125922881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGGATTTAATAGGCCATCTAAAATCCAAGAGATGGCTCTCCCTATGATGCTGGCACATCCACCCCAGA
ACCTCATAGCACAGAGCCAGTCTGGAACAGGAAAGACAGCGGCATTTGTGTTGGCAATGTTAAGCAGAGT
TAATGCCTTGGAATTGTTCCCACAGTGCCTCTGCCTAGCTCCTACTTATGAATTGGCTCTGCAAACTGGC
CGTGTGGTTGAGCAGATGGGAAAATTCTGTGTGGATGTTCAAGTGATGTATGCCATTCGAGGGAATCGAA
TTCCCAGAGGCACCGACATCACTAAACAGATTATAATTGGCACTCCTGGGACTGTCCTAGATTGGTGTTT
TAAACTAAAATTGATTGATTTGACTAAGATTCGTGTGTTTGTCCTGGATGAAGCAGATGTGATGATTGAC
ACTCAAGGATTCTCAGATCATAGTATTCGTATTCAAAGAGCTCTACCCTCCGAATGCCAAATGCTCCTCT
TTTCAGCAACCTTTGAGGACTCTGTGTGGCACTTTGCTGAGCGAATCATCCCTGACCCTAATGTTATCAA
GTTACGCAAAGAGGAGCTCACACTGAACAACATCCGGCAATATTACGTGCTGTGTGAGCACAGGAAAGAC
AAATACCAAGCTCTGTGCAACATTTATGGCAGCATCACCATTGGTCAGGCCATCATCTTCTGCCAGACTC
GTCGAAACGCTAAGTGGTTGACCGTGGAGATGATACAGGATGGCCACCAGGTGTCTTTGTTAAGCGGGGA
GCTGACCGTGGAGCAGCGAGCTTCCATCATTCAGAGGTTTCGGGATGGGAAAGAGAAGGTTCTCATAACA
ACTAATGTTTGTGCCCGAGGGATTGATGTGAAGCAGGTCACAATTGTTGTGAACTTTGATCTCCCTGTAA
AACAAGGAGAGGAGCCGGACTATGAGACCTACCTCCACCGCATAGGGCGGACGGGGCGCTTTGGGAAAAA
AGGCCTTGCCTTCAACATGATTGAAGTAGATGAGCTGCCCTCGCTCATGAAAATCCAGGACCACTTTAAC
AGCAGTATTAAGCAACTCAACGCTGAAGACATGGATGAAATTGAAAAGATTGACTATTGA

Translation (369 aa):
MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTG
RVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMID
TQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKD
KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLIT
TNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN
SSIKQLNAEDMDEIEKIDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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