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Report for CCDS8024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8024.1 Public Homo sapiens 11 ROM1 24 110 108 CCDS HistoryNCBI Gene:6094Re-query CCDS DB by CCDS ID:8024.1Re-query CCDS DB by GeneID:6094See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8024.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278833.4 ENSP00000278833.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278833.4Link to Ensembl Protein Viewer:ENSP00000278833.3Re-query CCDS DB by Nucleotide ID:ENST00000278833Re-query CCDS DB by Protein ID:ENSP00000278833
Original member Current member NCBI NM_000327.4 NP_000318.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000327.4Link to Protein Sequence:NP_000318.2Re-query CCDS DB by Nucleotide ID:NM_000327Re-query CCDS DB by Protein ID:NP_000318Link to BLAST:NP_000318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000318.2 351 Q03395 351 100% 0 0

Chromosomal Locations for CCDS 8024.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62613282 62613871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62614258 62614504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62614621 62614839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCGCCGGTGTTGCCCCTGGTGCTGCCCCTGCAGCCCCGCATCCGCCTGGCACAAGGGCTCTGGCTCC
TCTCCTGGCTGCTGGCGCTGGCTGGTGGCGTCATCCTCCTCTGTAGTGGGCACCTCCTGGTCCAGCTAAG
GCACCTTGGCACCTTCCTGGCTCCCTCCTGTCAGTTCCCTGTCCTGCCCCAGGCTGCCCTGGCAGCGGGC
GCGGTGGCTCTGGGCACAGGACTAGTGGGTGTAGGAGCCAGCCGGGCAAGTCTGAATGCAGCTCTATACC
CTCCCTGGCGAGGGGTCCTGGGCCCGCTGCTGGTGGCTGGCACGGCTGGTGGGGGGGGGCTCCTGGTCGT
CGGCCTCGGGCTAGCCCTGGCTTTGCCTGGGAGTCTGGATGAGGCGCTGGAGGAGGGCCTGGTGACTGCC
TTGGCTCACTACAAGGACACAGAGGTGCCTGGGCACTGTCAGGCCAAAAGGCTGGTGGATGAGCTGCAAC
TGAGGTACCACTGCTGCGGGCGCCACGGGTACAAGGATTGGTTTGGGGTCCAGTGGGTCAGCAGCCGTTA
CCTGGATCCCGGTGACCGGGATGTGGCTGACCGGATCCAGAGCAATGTAGAAGGCCTATACCTGACTGAT
GGGGTCCCTTTCTCCTGTTGCAACCCCCACTCACCCCGGCCTTGCCTGCAAAACCGTCTTTCAGACTCCT
ACGCCCACCCCCTGTTCGATCCCCGACAACCCAACCAAAACCTCTGGGCCCAAGGGTGCCATGAGGTGCT
GCTGGAGCACTTGCAGGACTTGGCAGGCACACTGGGTAGCATGCTGGCTGTCACCTTCCTACTGCAGGCT
CTGGTGCTCCTTGGCCTGCGGTACCTGCAAACAGCACTGGAGGGGCTTGGAGGGGTCATTGATGCGGGAG
GAGAGACCCAGGGCTATCTCTTTCCCAGTGGGCTGAAAGATATGCTGAAAACAGCATGGCTACAGGGAGG
GGTTGCCTGCAGGCCAGCACCTGAGGAGGCCCCACCAGGAGAAGCACCTCCCAAGGAGGATCTATCTGAG
GCCTAG

Translation (351 aa):
MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFPVLPQAALAAG
AVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVGLGLALALPGSLDEALEEGLVTA
LAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTD
GVPFSCCNPHSPRPCLQNRLSDSYAHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQA
LVLLGLRYLQTALEGLGGVIDAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSE
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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