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Report for CCDS79.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79.1 Public Homo sapiens 1 PLEKHG5 24 110 108 CCDS HistoryNCBI Gene:57449Re-query CCDS DB by CCDS ID:79.1Re-query CCDS DB by GeneID:57449See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 79.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340850.10 ENSP00000344570.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340850.10Link to Ensembl Protein Viewer:ENSP00000344570.5Re-query CCDS DB by Nucleotide ID:ENST00000340850Re-query CCDS DB by Protein ID:ENSP00000344570
Original member Current member EBI ENST00000377728.8 ENSP00000366957.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377728.8Link to Ensembl Protein Viewer:ENSP00000366957.3Re-query CCDS DB by Nucleotide ID:ENST00000377728Re-query CCDS DB by Protein ID:ENSP00000366957
Original member Current member EBI ENST00000377740.5 ENSP00000366969.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377740.5Link to Ensembl Protein Viewer:ENSP00000366969.4Re-query CCDS DB by Nucleotide ID:ENST00000377740Re-query CCDS DB by Protein ID:ENSP00000366969
Original member Current member EBI ENST00000400913.6 ENSP00000383704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400913.6Link to Ensembl Protein Viewer:ENSP00000383704.1Re-query CCDS DB by Nucleotide ID:ENST00000400913Re-query CCDS DB by Protein ID:ENSP00000383704
Original member Current member EBI ENST00000675694.1 ENSP00000501925.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675694.1Link to Ensembl Protein Viewer:ENSP00000501925.1Re-query CCDS DB by Nucleotide ID:ENST00000675694Re-query CCDS DB by Protein ID:ENSP00000501925
Original member NCBI NM_001042664.1 NP_001036129.1 Updated not alive Link to Nucleotide Sequence:NM_001042664.1Link to Protein Sequence:NP_001036129.1Re-query CCDS DB by Nucleotide ID:NM_001042664Re-query CCDS DB by Protein ID:NP_001036129
Current member NCBI NM_001042664.2 NP_001036129.1 Accepted alive Link to Nucleotide Sequence:NM_001042664.2Link to Protein Sequence:NP_001036129.1Re-query CCDS DB by Nucleotide ID:NM_001042664Re-query CCDS DB by Protein ID:NP_001036129Link to BLAST:NP_001036129.1
Original member NCBI NM_001042665.1 NP_001036130.1 Updated not alive Link to Nucleotide Sequence:NM_001042665.1Link to Protein Sequence:NP_001036130.1Re-query CCDS DB by Nucleotide ID:NM_001042665Re-query CCDS DB by Protein ID:NP_001036130
Current member NCBI NM_001042665.2 NP_001036130.1 Accepted alive Link to Nucleotide Sequence:NM_001042665.2Link to Protein Sequence:NP_001036130.1Re-query CCDS DB by Nucleotide ID:NM_001042665Re-query CCDS DB by Protein ID:NP_001036130Link to BLAST:NP_001036130.1
Original member Current member NCBI NM_020631.6 NP_065682.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020631.6Link to Protein Sequence:NP_065682.2Re-query CCDS DB by Nucleotide ID:NM_020631Re-query CCDS DB by Protein ID:NP_065682Link to BLAST:NP_065682.2
Original member Current member NCBI NM_198681.4 NP_941374.3 Accepted alive Link to Nucleotide Sequence:NM_198681.4Link to Protein Sequence:NP_941374.3Re-query CCDS DB by Nucleotide ID:NM_198681Re-query CCDS DB by Protein ID:NP_941374Link to BLAST:NP_941374.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036129.1 1006 O94827-5 1006 100% 0 0
NP_001036130.1 1006 O94827-5 1006 100% 0 0
NP_065682.2 1006 O94827-5 1006 100% 0 0
NP_941374.3 1006 O94827-5 1006 100% 0 0

Chromosomal Locations for CCDS 79.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6467563 6467572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6467825 6468586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6469042 6469241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6469335 6469450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6469544 6469676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470236 6470355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470506 6470643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470735 6470884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470990 6471100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6471488 6471637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6471758 6471808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6472527 6472622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6472986 6473174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6473251 6473454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6474013 6474164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6474451 6474587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6475047 6475138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6475462 6475522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6475931 6476036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6477529 6477571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGCATTATGATGGGCATGTCCGCTTCGACCTTCCCCCACAAGGCTCTGTGCTGGCCCGGAACGTGTCCA
CCCGGTCATGCCCGCCGCGCACCAGCCCCGCAGTGGACTTGGAGGAGGAGGAGGAGGAGAGCTCTGTGGA
TGGCAAAGGGGACCGGAAGAGCACAGGCCTGAAACTCTCCAAGAAGAAAGCAAGGAGGAGACACACGGAT
GACCCAAGCAAGGAATGCTTCACTCTGAAATTTGACCTGAATGTGGACATTGAGACAGAGATCGTCCCAG
CCATGAAGAAGAAGTCACTGGGGGAGGTGCTGCTGCCTGTATTTGAAAGGAAGGGCATTGCGCTGGGCAA
AGTGGACATCTACCTGGACCAGTCCAACACACCCCTGTCCCTCACCTTCGAGGCCTACAGGTTCGGGGGA
CACTACCTTCGTGTCAAAGCCCCAGCCAAGCCTGGAGATGAGGGCAAGGTGGAGCAGGGCATGAAGGACT
CCAAGTCCCTGAGTTTGCCGATTCTGCGGCCAGCTGGGACCGGGCCCCCCGCCCTGGAGCGTGTGGACGC
CCAGAGCCGCCGGGAGAGCCTGGACATCTTGGCCCCTGGCCGCCGCCGCAAGAACATGTCGGAGTTCCTG
GGGGAGGCGAGCATCCCCGGGCAGGAGCCCCCCACGCCCTCCAGCTGCTCTCTGCCCAGCGGCAGCAGTG
GCAGCACCAACACTGGCGACAGCTGGAAGAACCGGGCGGCCAGTCGCTTCAGCGGCTTTTTCAGCTCCGG
CCCCAGCACCAGCGCCTTTGGCCGGGAGGTAGACAAGATGGAGCAGCTGGAGGGCAAGCTGCACACCTAC
AGCCTCTTCGGGCTGCCCAGGCTGCCCCGGGGGCTGCGCTTCGACCATGACTCCTGGGAGGAGGAGTACG
ATGAAGACGAGGATGAGGACAATGCCTGCCTGAGGCTGGAGGACAGCTGGCGGGAGCTCATTGATGGGCA
TGAGAAGCTGACCCGGCGGCAGTGCCACCAGCAGGAGGCGGTGTGGGAGCTGCTGCACACGGAGGCCTCC
TACATCAGGAAACTGCGGGTGATCATCAACCTGTTCCTGTGCTGCCTCCTGAACCTGCAAGAGTCAGGGC
TGCTGTGTGAGGTGGAGGCGGAGCGCCTGTTCAGCAACATCCCGGAGATCGCGCAGCTGCACCGCAGGCT
GTGGGCTAGCGTGATGGCGCCGGTGCTGGAGAAGGCGCGGCGCACGCGAGCGCTGCTACAGCCCGGGGAC
TTCCTCAAAGGCTTCAAGATGTTCGGCTCGCTCTTCAAGCCCTACATCCGCTACTGCATGGAGGAGGAGG
GCTGCATGGAGTACATGCGCGGCCTGCTGCGCGACAACGACCTCTTCCGGGCCTACATCACGTGGGCGGA
GAAGCACCCACAGTGCCAGAGGCTGAAGCTGAGCGACATGCTGGCCAAACCCCACCAGCGGCTCACCAAG
TACCCGCTGCTGCTCAAGTCGGTGCTGAGGAAGACCGAGGAGCCGCGCGCCAAGGAGGCCGTCGTCGCCA
TGATCGGCTCCGTGGAGCGCTTCATCCACCACGTGAACGCGTGCATGCGGCAGCGGCAGGAGCGGCAGCG
GCTGGCGGCCGTGGTGAGCCGCATCGACGCCTACGAGGTGGTGGAAAGCAGCAGCGACGAAGTGGACAAG
CTCCTGAAGGAATTTCTGCACCTGGACTTGACAGCGCCCATCCCTGGCGCCTCCCCGGAGGAGACGCGGC
AGCTGCTGCTGGAGGGGAGCCTGAGGATGAAGGAGGGGAAGGACAGCAAGATGGATGTGTACTGCTTCCT
CTTCACGGATCTGCTGTTGGTGACCAAAGCAGTGAAGAAGGCAGAGAGGACCAGGGTCATCAGGCCACCC
CTGCTCGTGGACAAGATTGTGTGCCGGGAGCTACGGGACCCTGGGTCCTTCCTCCTTATCTACCTGAATG
AGTTTCACAGTGCTGTAGGGGCCTACACGTTCCAGGCCAGTGGCCAGGCCTTGTGCCGTGGCTGGGTGGA
CACCATTTACAATGCCCAGAACCAGCTGCAACAGCTGCGTGCACAGGAGCCCCCAGGCAGTCAGCAGCCC
CTGCAGAGCCTGGAAGAGGAGGAGGATGAGCAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAG
GCGAGGACAGTGGCACTTCAGCTGCCAGCTCCCCTACCATCATGCGGAAAAGCAGCGGCAGCCCCGACTC
TCAGCACTGTGCCTCAGATGGCTCCACGGAGACCCTGGCCATGGTTGTGGTAGAGCCTGGGGACACGCTG
TCCTCCCCCGAGTTCGACAGCGGTCCTTTCAGCTCCCAGTCTGATGAGACCTCTCTCAGCACCACTGCCT
CATCTGCCACGCCCACCAGTGAGCTGCTGCCCCTGGGTCCGGTGGACGGCCGCTCCTGCTCCATGGACTC
TGCCTACGGCACCCTCTCCCCAACCTCCTTACAAGACTTTGTGGCCCCAGGCCCAATGGCAGAGCTAGTG
CCTCGGGCCCCAGAGTCCCCACGAGTTCCTTCCCCTCCACCCTCGCCCCGTCTCCGCCGCCGCACCCCTG
TCCAGCTGTTGAGCTGCCCGCCCCACCTGCTCAAGTCTAAGTCCGAGGCCAGCCTCCTCCAGCTGCTGGC
AGGGGCTGGCACCCATGGGACACCCTCTGCCCCCAGCCGCAGCCTGTCAGAGCTCTGCCTGGCTGTTCCA
GCCCCAGGTATTAGGACTCAGGGCTCCCCTCAGGAAGCTGGGCCCAGCTGGGATTGCCGAGGGGCCCCTA
GCCCTGGCAGCGGTCCTGGGCTAGTCGGCTGCCTGGCCGGGGAACCTGCAGGCTCCCACAGGAAGAGGTG
TGGAGACCTGCCCTCGGGGGCCTCTCCCAGGGTCCAGCCTGAGCCCCCACCAGGGGTCTCTGCCCAGCAC
AGGAAGCTGACCCTGGCCCAGCTCTACCGAATCAGGACCACCCTGCTGCTTAACTCCACGCTCACTGCCT
CGGAGGTCTGA

Translation (1006 aa):
MHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDLEEEEEESSVDGKGDRKSTGLKLSKKKARRRHTD
DPSKECFTLKFDLNVDIETEIVPAMKKKSLGEVLLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGG
HYLRVKAPAKPGDEGKVEQGMKDSKSLSLPILRPAGTGPPALERVDAQSRRESLDILAPGRRRKNMSEFL
GEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHTY
SLFGLPRLPRGLRFDHDSWEEEYDEDEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEAS
YIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGD
FLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTK
YPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDK
LLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPP
LLVDKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDTIYNAQNQLQQLRAQEPPGSQQP
LQSLEEEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVEPGDTL
SSPEFDSGPFSSQSDETSLSTTASSATPTSELLPLGPVDGRSCSMDSAYGTLSPTSLQDFVAPGPMAELV
PRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHLLKSKSEASLLQLLAGAGTHGTPSAPSRSLSELCLAVP
APGIRTQGSPQEAGPSWDCRGAPSPGSGPGLVGCLAGEPAGSHRKRCGDLPSGASPRVQPEPPPGVSAQH
RKLTLAQLYRIRTTLLLNSTLTASEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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