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Report for CCDS78305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78305.1 Public Homo sapiens 8 USP17L7 24 110 108 CCDS HistoryNCBI Gene:392197Re-query CCDS DB by CCDS ID:78305.1Re-query CCDS DB by GeneID:392197See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 78305.1
This CCDS representation lacks full-length human transcript support. Its representation is therefore inferred, but it is supported by paralogous transcripts.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 78305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530447.5 ENSP00000485337.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530447.5Link to Ensembl Protein Viewer:ENSP00000485337.2Re-query CCDS DB by Nucleotide ID:ENST00000530447Re-query CCDS DB by Protein ID:ENSP00000485337
Original member Current member NCBI NM_001256869.2 NP_001243798.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256869.2Link to Protein Sequence:NP_001243798.1Re-query CCDS DB by Nucleotide ID:NM_001256869Re-query CCDS DB by Protein ID:NP_001243798Link to BLAST:NP_001243798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243798.1 530 P0C7H9 530 100% 0 0

Chromosomal Locations for CCDS 78305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12132417 12134009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAAGACGACTCACTCTATTTGGGAGGTGACTGGCAGTTCAATCACTTTTCAAAACTCACATCTTCTC
GGCTAGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCTCTGAAAAGTCACCACTCTCATCTGAGAC
CCGTTTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAGGGAGAAGCTTCCTCTG
AGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAAGATAGGAAATACCTTCTATGTGAACGTTT
CCCTGCAGTGCCTGACATACACACTGCCGCTTTCCAACTACATGCTGTCCCGGGAGGACTCTCAAACGTG
TCATCTTCACAAGTGCTGCATGTTCTGTACTATGCAAGCTCACATCACATGGGCCCTCCACAGTCCTGGC
CATGTCATCCAGCCCTCACAGGTATTGGCTGCTGGCTTCCATAGAGGTGAGCAGGAGGATGCCCATGAAT
TTCTCATGTTTACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGGCACAAGCAGCTAGATCATCACTC
CAAGGACACCACCCTCATCCACCAAATATTTGGAGCGTATTGGAGATCTCAAATCAAGTATCTCCACTGC
CACGGCGTTTCAGACACCTTTGACCCTTACCTGGACATCGCCCTGGATATCCAGGCAGCTCAGAGTGTCA
AGCAAGCTTTGGAACAGTTGGTGAAGCCCAAAGAACTCAATGGAGAGAATGCCTATCATTGTGGTCTTTG
TCTCCAGAAGGCGCCTGCCTCCAAGACGTTAACTTTACCCACTTCTGCCAAGGTCCTCATTCTTGTATTG
AAGAGATTCTCCGATGTCACAGGCAACAAACTTGCCAAGAATGTGCAATATCCTAAGTGCCGTGACATGC
AGCCATACATGTCTCAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCACGCTGG
GTGGAGTTGTCACAACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCAGTGGTATAAAATGGAT
GATGCCGAGGTCACTGCCTCTGGCATCACCTCTGTCCTGAGTCAACAGGCCTATGTCCTCTTTTACATCC
AGAAGAGTGAATGGGAAAGACACAGTGAGAGTGTGTCAAGAGGCAGGGAACCAAGAGCCCTTGGTGCTGA
AGACACAGACAGGCCAGCAACGCAAGGAGAGCTCAAGAGAGACCACCCTTGCCTCCAGGTACCCGAGTTG
GACGAGCACTTGGTGGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCCCCAAGAGCAAA
ACAAAACGAAGCCTGAGTTCAACGTCAGAAAAGTTGAAGGTACCCTGCCTCCCAACGTACTTGTGATTCA
TCAATCAAAATACAAGTGTGGTATGAAAAACCATCATCCTGAACAGCAAAGCTCCCTGCTAAACCTCTCT
TCGACGAAACCGACAGATCAGGAGTCCATGAACACTGGCACACTCGCTTCTCTGCAAGGGAGCACCAGGA
GATCCAAAGGGAATAACAAACACAGCAAGAGATCTCTGCTTGTGTGCCAGTGA

Translation (530 aa):
MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPL
SSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPG
HVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHC
HGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVL
KRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD
DAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPEL
DEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLS
STKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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