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Report for CCDS77617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77617.1 Public Homo sapiens 21 TPTE 24 110 108 CCDS HistoryNCBI Gene:7179Re-query CCDS DB by CCDS ID:77617.1Re-query CCDS DB by GeneID:7179See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612746.1 ENSP00000483087.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612746.1Link to Ensembl Protein Viewer:ENSP00000483087.1Re-query CCDS DB by Nucleotide ID:ENST00000612746Re-query CCDS DB by Protein ID:ENSP00000483087
Original member Current member NCBI NM_001290224.2 NP_001277153.2 Accepted alive Link to Nucleotide Sequence:NM_001290224.2Link to Protein Sequence:NP_001277153.2Re-query CCDS DB by Nucleotide ID:NM_001290224Re-query CCDS DB by Protein ID:NP_001277153Link to BLAST:NP_001277153.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277153.2 413 P56180-4 413 100% 0 0

Chromosomal Locations for CCDS 77617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 10561160 10561191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10567670 10567789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10569437 10569536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10569683 10569746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10570485 10570549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10577460 10577520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10578337 10578418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10578517 10578605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10590462 10590523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10592293 10592373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10595982 10596087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10598015 10598094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10602058 10602150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10603562 10603632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 10605417 10605552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGATGTTCTTCTTCGAGTATTTGTAGAAAGGAGACAGCAGTATTTTTCTGACTTATTTAACATTTTAG
ATACTGCCATTATTGTGATTCTTCTGCTGGTTGATGTCGTTTACATTTTTTTTGACATTAAGTTGCTTAG
GAATATTCCCAGATGGACACATTTACTTCGACTTCTACGACTTATTATTCTGTTAAGAATTTTTCATCTG
TTTCATCAAAAAAGACAACTTGAAAAGCTGATAAGAAGGCGGGTTTCAGAAAACAAAAGGCGATACACAA
GGGATGGATTTGACCTAGACCTCACTTACGTTACAGAACGTATTATTGCTATGTCATTTCCATCTTCTGG
AAGGCAGTCTTTCTATAGAAATCCAATCAAGGAAGTTGTGCGGTTTCTAGATAAGAAACACCGAAACCAC
TATCGAGTCTACAATCTATGCAGTGAAAGAGCTTACGATCCTAAGCACTTCCATAATAGGGTCGTTAGAA
TCATGATTGATGATCATAATGTCCCCACTCTACATCAGATGGTGGTTTTCACCAAGGAAGTAAATGAGTG
GATGGCTCAAGATCTTGAAAACATCGTAGCGATTCACTGTAAAGGAGGCACAGATAGAACAGGAACTATG
GTTTGTGCCTTCCTTATTGCCTCTGAAATATGTTCAACTGCAAAGGAAAGCCTGTATTATTTTGGAGAAA
GGCGAACAGATAAAACCCACAGCGAAAAATTTCAGGGAGTAAAAACTCCTTCTCAGAAGAGATATGTTGC
ATATTTTGCACAAGTGAAACATCTCTACAACTGGAATCTCCCTCCAAGACGGATACTCTTTATAAAACAC
TTCATTATTTATTCGATTCCTCGTTATGTACGTGATCTAAAAATCCAAATAGAAATGGAGAAAAAGGTTG
TCTTTTCCACTATTTCATTAGGAAAATGTTCGGTACTTGATAACATTACAACAGACAAAATATTAATTGA
TGTATTCGACGGTCTACCTCTGTATGATGATGTGAAAGTGCAGTTTTTCTATTCGAATCTTCCTACATAC
TATGACAATTGCTCATTTTACTTCTGGTTGCACACATCTTTTATTGAAAATAACAGGCTTTATCTACCAA
AAAATGAATTGGATAATCTACATAAACAAAAAGCACGGAGAATTTATCCATCAGATTTTGCCGTGGAGAT
ACTTTTTGGCGAGAAAATGACTTCCAGTGATGTTGTAGCTGGATCCGATTAA

Translation (413 aa):
MDVLLRVFVERRQQYFSDLFNILDTAIIVILLLVDVVYIFFDIKLLRNIPRWTHLLRLLRLIILLRIFHL
FHQKRQLEKLIRRRVSENKRRYTRDGFDLDLTYVTERIIAMSFPSSGRQSFYRNPIKEVVRFLDKKHRNH
YRVYNLCSERAYDPKHFHNRVVRIMIDDHNVPTLHQMVVFTKEVNEWMAQDLENIVAIHCKGGTDRTGTM
VCAFLIASEICSTAKESLYYFGERRTDKTHSEKFQGVKTPSQKRYVAYFAQVKHLYNWNLPPRRILFIKH
FIIYSIPRYVRDLKIQIEMEKKVVFSTISLGKCSVLDNITTDKILIDVFDGLPLYDDVKVQFFYSNLPTY
YDNCSFYFWLHTSFIENNRLYLPKNELDNLHKQKARRIYPSDFAVEILFGEKMTSSDVVAGSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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