NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS76489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76489.1 Public Homo sapiens 11 CRTAM 24 110 108 CCDS HistoryNCBI Gene:56253Re-query CCDS DB by CCDS ID:76489.1Re-query CCDS DB by GeneID:56253See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533709.1 ENSP00000433728.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533709.1Link to Ensembl Protein Viewer:ENSP00000433728.1Re-query CCDS DB by Nucleotide ID:ENST00000533709Re-query CCDS DB by Protein ID:ENSP00000433728
Original member Current member NCBI NM_001304782.2 NP_001291711.1 Accepted alive Link to Nucleotide Sequence:NM_001304782.2Link to Protein Sequence:NP_001291711.1Re-query CCDS DB by Nucleotide ID:NM_001304782Re-query CCDS DB by Protein ID:NP_001291711Link to BLAST:NP_001291711.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291711.1 194 O95727-2 194 100% 0 0

Chromosomal Locations for CCDS 76489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 122862409 122862544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122864636 122864719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122867409 122867555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122868013 122868099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122871269 122871399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGTGGGTAAAACTGCTCTCTATAGTAGCAGAATTTTGTTTTTCCCCTTTCCTAGTTACTGATGAAGAGA
CAGCTTCAGATGCTCTGGAGAGAAACTCTCTATCCTCTCAAGACCCACAGCAGCCCACCAGTACTGTCTC
AGTAACGGAAGATTCTAGTACATCGGAGATTGACAAGGAAGAGAAAGAACAAACCACTCAAGATCCTGAC
TTGACCACCGAAGCAAATCCTCAGTATTTAGGACTGGCAAGAAAGAAAAGTGGCATCCTGCTGCTCACGC
TGGTGTCCTTCCTCATTTTCATACTCTTCATCATAGTCCAGCTCTTCATCATGAAGCTGAGGAAAGCACA
TGTGATATGGAAGAAAGAAAACGAAGTTTCAGAACACACACTAGAAAGTTACAGATCAAGGTCAAATAAT
GAAGAAACATCATCTGAAGAGAAAAATGGCCAATCTTCCCACCCTATGCGTTGCATGAACTACATCACAA
AGTTGTACTCAGAAGCAAAAACAAAGAGGAAGGAAAATGTACAACATTCAAAATTAGAAGAAAAGCACAT
CCAAGTACCAGAGAGTATTGTGTAG

Translation (194 aa):
MWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPD
LTTEANPQYLGLARKKSGILLLTLVSFLIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNN
EETSSEEKNGQSSHPMRCMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH