NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS76108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76108.1 Public Homo sapiens 1 PRAMEF9 24 110 108 CCDS HistoryNCBI Gene:343070Re-query CCDS DB by CCDS ID:76108.1Re-query CCDS DB by GeneID:343070See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 76108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415919.3 ENSP00000485258.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415919.3Link to Ensembl Protein Viewer:ENSP00000485258.1Re-query CCDS DB by Nucleotide ID:ENST00000415919Re-query CCDS DB by Protein ID:ENSP00000485258
Original member Current member NCBI NM_001010890.3 NP_001010890.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010890.3Link to Protein Sequence:NP_001010890.2Re-query CCDS DB by Nucleotide ID:NM_001010890Re-query CCDS DB by Protein ID:NP_001010890Link to BLAST:NP_001010890.2

Chromosomal Locations for CCDS 76108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13175281 13175573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13176241 13176822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13178571 13179132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGAAGATGAGCATCCGGACTCCACCCAGACTCCTGGAGCTGGCGGGGCGGAGCCTGCTGAGGGACCAAG
CCTTGGCCATGTCCACCCTGGAGGAGCTGCCCACAGAACTTTTCCCCCCACTGTTCATGGAGGCCTTCAG
CAGGAGACGCTGTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCGCCGCCTCCCTCTGAGGCCT
CTGATAAAGATGCCTTGTCTGGAGGCCTTCCAAGCTGTGCTCGATGGGCTGGATGCACTGCTTACCCAAG
GGGTTTGTCCCAGGAGGTGGAAACTTCAAGTGCTGGATTTACAGGATGTCTGTGAGAACTTCTGGATGGT
TTGGTCTGAAGCTATGGCCCGTGGGTCCTTCCTCAATGCCAAGAGGAACAAAACACCAGTGCAGGACTGT
CCAAGGATGAGAGGACAGCAGCCCTTGACTGTGTTCGTAGAACTTTGGCTCAAGAACAGGACTCTGGATG
AATACCTCACCTACCTCCTTCTATGGGTCAAGCAGAGGAAAGATTTACTACACCTGTGCTGTAAGAAGCT
GAAAATTTTGGGAATGCCCTTCCGCAATATCAGAAGCATCCTGAAAATGGTGAACCTAGACTGTATCCAG
GAGGTGGAAGTGAATTGCAAGTGGGTACTGCCCATCCTGACACAGTTTACCCCATACCTGGGCCACATGA
GGAATCTTCAGAAGCTCGTTCTCTCCCACATGGATGTCTCTCGCTACGTTTCCCCAGAGCAGAAGAAGGA
GATTGTTACCCAGTTCACCACTCAGTTCCTCAAGCTGCACTGCCTCCAAAAGCTTTATATGAACTCTGTT
TCTTTCCTCGAAGGCCACCTGGACCAGCTGCTCAGCTGTCTGAAGACCTCGTTAAAGGTCCTCACAATAA
CTAACTGTGTGCTTTTGGAATCAGACTTGAAGCATCTATCCCAGTGCCCGAGTATCAGTCAACTAAAGAC
CCTGGACCTGAGTGGCATCAGACTGACCAATTACAGTCTTGTGCCTCTCCAAATTCTCCTAGAAAAAGTT
GCAGCCACCCTTGAGTACTTGGATTTAGATGACTGTGGCATCATAGACTCCCAAGTCAACGCCATCCTGC
CTGCCCTGAGCCGCTGCTTTGAGCTCAATGCCTTCAGCTTCTGTGGAAATCCCATCTCCATGGCCACCCT
GGAGAACCTGCTGAGCCACACAATCATACTCAAAAACTTATGCGTGGAGGTGTATCCTGCCCCGCGGGAG
AGTTATGGTGCTGATGGTACTCTCTGCTGGAGCAGATTTGCTCAAATTAGGGCTGAGCTGATGAACAGAG
TGAGGGACTTAAGGCACCCCAAGAGGATCTTTTTCTGTATTGACAACTGCCCTGACTGTGGCAACAGGTC
ATTTTATGACCTGGAGGCAGATCAATACTGCTGTTGA

Translation (478 aa):
MKMSIRTPPRLLELAGRSLLRDQALAMSTLEELPTELFPPLFMEAFSRRRCEALKLMVQAWPFRRLPLRP
LIKMPCLEAFQAVLDGLDALLTQGVCPRRWKLQVLDLQDVCENFWMVWSEAMARGSFLNAKRNKTPVQDC
PRMRGQQPLTVFVELWLKNRTLDEYLTYLLLWVKQRKDLLHLCCKKLKILGMPFRNIRSILKMVNLDCIQ
EVEVNCKWVLPILTQFTPYLGHMRNLQKLVLSHMDVSRYVSPEQKKEIVTQFTTQFLKLHCLQKLYMNSV
SFLEGHLDQLLSCLKTSLKVLTITNCVLLESDLKHLSQCPSISQLKTLDLSGIRLTNYSLVPLQILLEKV
AATLEYLDLDDCGIIDSQVNAILPALSRCFELNAFSFCGNPISMATLENLLSHTIILKNLCVEVYPAPRE
SYGADGTLCWSRFAQIRAELMNRVRDLRHPKRIFFCIDNCPDCGNRSFYDLEADQYCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH