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Report for CCDS75837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75837.1 Public Homo sapiens 9 SPATA31A6 24 110 108 CCDS HistoryNCBI Gene:389730Re-query CCDS DB by CCDS ID:75837.1Re-query CCDS DB by GeneID:389730See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332857.7 ENSP00000329825.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332857.7Link to Ensembl Protein Viewer:ENSP00000329825.6Re-query CCDS DB by Nucleotide ID:ENST00000332857Re-query CCDS DB by Protein ID:ENSP00000329825
Original member Current member NCBI NM_001145196.1 NP_001138668.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145196.1Link to Protein Sequence:NP_001138668.1Re-query CCDS DB by Nucleotide ID:NM_001145196Re-query CCDS DB by Protein ID:NP_001138668Link to BLAST:NP_001138668.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138668.1 1343 Q5VVP1 1343 100% 0 0

Chromosomal Locations for CCDS 75837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 42183688 42183876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42185069 42185126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42185695 42185755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42186011 42189734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4032 nt):
ATGGAGAATCTTCCCTTTCCTTTAAAATTACTTAGTGCCTCATCGCTAAACGCCCCCAGCTCCACACCAT
GGGTGTTGGATATCTTCCTCACCTTGGTGTTTGCCCTGGGGTTCTTCTTCCTATTACTCCCCTACTTATC
TTACTTCCATTGTGATGACCCACCCTCACCATCGCCTGGGAAGAGAAAGTGTCCAGTAGGGCGGAGGCGG
AGGCCCAGAGGCAGGATGAAAAACCACAGTCTGAGAGCTGGTAGAGAGTGCCCGAGAGGCCTGGAGGAGA
CTTCGGACCTTCTTTCACAACTGCAGAGCCTCCTGGGGCCACACCTTGACAAAGGTGACTTTGGTCAGCT
CTCCGGTCCAGACCCCCCAGGTGAGGTGGGCGAAAGAGCACCTGATGGAGCCTCCCAGTCCTCTCATGAG
CCTATGGAAGATGCTGCTCCCATTCTCTCCCCGTTAGCTTCCCCGGATCCTCAAGCCAAGCATCCTCAGG
ATCTGGCCTCCACCCCATCACCAGGCCCAATGACCACCTCAGTCTCCTCCCTAAGTGCCTCCCAGCCACC
AGAACCTTCCCTTCCCCTAGAACACCCCTCACCCGAGCCACCTGCACTTTTCCCTCACCCACCACACACC
CCTGATCCTCTGGCCTGCTCTCCGCCTCCTCCAAAAGGCTTCACTGCTCCTCCCCTGCGGGACTCCACAC
TGATAACTCCATCTCACTGTGACTCAGTGGCACTTCCACTGGGCACCGTCCCTCAAAGCTTGTCTCCACA
TGAGGATTTGGTGGCTTCTGTCCCAGCCATCTCAGGCCTTGGTGGCTCAAACAGTCATGTTTCTGCCTCC
TCCCGGTGGCAGGAGACTGCCAGAACCTCGTGCGCCTTTAACTCATCAGTCCAGCAAGATCCTCTTTCCC
GCCACCCACCAGAGACCTGTCAGATGGAAGCTGGTAGCCTGTTTTTGCTCAGCTCTGATGGCCAGAATGT
CGTGGGGATACAAGTCACAGAAACAGCCAAGGTCAACATTTGGGAAGAAAAAGAAAATGTTGGATCATTT
ACAAATCAAATGACCCCAGAAAAGCACTTAAATTCTTTGGGGAATTTGGCTAAATCATTGGATGCTGAGC
AGGACACCACAAACCCAAAACCCTTCTGGAACATGGGAGAGAACTCGAAACAGCTGCCCGGACCTCAGAA
GTGCTCAGATCCTAGGCTCTTGCAGGAAAGTTTTTGGAAGAATTATAGCCAGCTTTTCTGGGGCCTCCCC
TCTCTGCACAGCGAGTCCCTGGTGGCTAACGCCTGGGTAACTGACAGGTCTTATACTTTACAGTCTCCTC
CTTTCTTGTTCAATGAAATGTCCAATGTCTGCCCAATTCAAAGGGAGACTACAATGTCCCCACTGCTTTT
CCAGGCCCAGCCCCTGTCCCACCGCCAACCCTTTATTTCATCCACACCCCAATTCCTGCCCACACCTATG
GCTCAGGCCGAGGCTCAGGCCCATCTTCAGTCTTCTTTCCCAGTCCTATCTCCTGCTTTTCCATCCCTGA
TTAAGAACACTGGAGTAGCTTGCCCTGCATCGCAGAATAAAGTGCAAGCTCTCTCCCTACCTGAAACTCA
GCACCCTGAATGGCCTTTGTTGAGGAAACAACTAGAAGGTAGGTTGGCTTTACCCTCTAGGGTCCAAAAA
TCTCAGGACGTCTTTAGTGTCTCCACTCCTAACCTTCCCCAGGAAAGTTTGACATCCATTCTGCCTGAGA
ACTTTCCAGTCAGTCCTGAACTCCGGAGACAACTGGAGCAACACATAAAAAAGTGGATCATCCAACACTG
GGGCAACCTGGGAAGGATCCAAGAGTCTCTGGATCTGATGCAGCTTCGGGACGAATCACCAGGGACAAGT
CAGGCCAAGGGCAAACCCAGTCCCTGGCAGTCCTCCACGTCCACAGGTGAAAGCAGCAAGGAGGCACAGA
AGGTGAAGTTCCAGCTAGAGAGGGACCTGTGCCCACATCTGGGGCAAATTCTGGGTGAGACCCCACAAAA
TCTATCCAGGGACATGAAAAGCTTCCCACGGAAGGTTCTGGGGGTGACTTCTGAGGAGTCGGAAAGGAAC
TTGAGGAAGCCCTTGAGGAGTGACTCGGGAAGTGATTTATTAAGATGCACAGAGAGGACTCATATAGAAA
ACATCCTGAAAGCCCACATGGGCAGGAACTTGGGCCAGACCAACGAGGGCTTGATCCCCGTGCGTGTGCG
TCGATCCTGGCTTGCTGTCAACCAGGCTCTTCCCGTGTCCAACACCCATGTGAAAACCAGCAATCTAGCA
GCCCCGAAAAGTGGGAAAGCCTGTGTGAACACAGCCCAGGTGCTTTCCTTCCTCGAGCCGTGTACTCAGC
AGGGGTTGGGAGCCCATATTGTGAGGTTTTGGGCCAAACACAGGTGGGGTCTACCCCTCAGGGTCCTCAA
GCCCATTCAGTGCTTTAAACTGGAAAAGGTTTCATCCTTGTCCCTTACGCAGCTTGCTGGTCCCTCCTCA
GCCACCTGTGAATCTGGGGCTGGCTCAGAAGTTGAGGTGGACATGTTCCTTAGAAAGCCACCAATGGCAA
GTCTGAGAAAGCAGGTGCTGACCAAAGCATCTGATCACATGCCAGAGAGTCTTCTGGCCTCCTCACCTGC
ATGGAAGCAGTTCCAGAGGGCACCGCGAGGAATCCCATCTTGGAATGATCATGGGCCCTTGAAGCCTCCT
CCAGCTGGACAGGAGGGCAGGTGGCCATCTAAGCCCCTCACGTACAGCCTCACAGGCAGCACCCAGCAGA
GCAGGAGCTTAGGAGCCCAATCTTCAAAGGCTGGAGAGACAAGGGAGGCAGTGCCACAATGCAGAGTCCC
CTTGGAAACCTGTATGCTGGCAAACCTCCAAGCCACAAGTGAGGATGTGCATGGTTTCGAGGCTCCAGGG
ACCAGCAAAAGCTCTCTACACCCTAGAGTGTCTGTCTCCCAAGATCCAAGAAAGCTGTGTCTTATGGAGG
AGGTTGTTAGTGAATTTGAGCCTGGAATGGCCACAAAGTCAGAGACCCAGCCTCAAGTTTGTGCCGCTGT
TGTGCTCCTTCCAGATGGGCAAGCATCTGTTGTGCCCCACGCTTCAGAGAATTTGGTTTCTCAAGTGCCC
CAGGGCCATCTCCAGAGCATGCCTACTGGGAACATGCGGGCTTCCCAGGAGCTACATGACCTCATGGCAG
CCAGAAGGAGCAAACTGGTGCAAGAGGAGCCCAGAAACCCAAACTGTCAAGGCTCATGCAAGAGCCAAAG
GCCAATGTTTCCCCCTATTCACAAGAGTGAGAAGTCTAGGAAGCCCAACTTAGAAAAACATGAAGAAAGG
CTTGAAGGATTGAGGACTCCTCAACTTACCCCAGTCAGGAAAACAGAAGACACCCATCAGGATGAAGGCG
TCCAGCTACTGCCATCAAAGAAACAGCCTCCTTCAGTAAGCCACTTTGGAGAAAACATCAAGCAATTTTT
TCAGTGGATTTTTTCAAAGAAAAAAAGCAAGCCAGCACCAGTCACTGCTGAGAGCCAAAAAACAGTAAAA
AACAGATCATGTGTGTACAGCAGCAGTGCTGAAGCTCAGGGTCTCATGACGGCAGTTGGACAAATGCTGG
ACAAGAAAATGTCACTTTGCCATGCGCACCATGCCTCGAAGGTAAATCAGCACAAACAGAAGTTTCAAGC
CCCAGTCTGTGGGTTTCCCTGCAACCACAGGCACCTCTTCTACTCAGAACATGGCAGAATACTGAGCTAT
GCAGCCAGCAGTCAACAAGCCACTCTCAAGAGCCAGGGTTGTCCCAACAGAGACAGGCAAATCAGAAATC
AACAGCCCTTGAAAAGTGTGCGGTGCAACAATGAGCAATGGGGCCTGCGACATCCCCAAATCTTGCACCC
CAAGAAAGCTGTATCCCCAGTCAGTCCCCCTCAGCACTGGCCGAAGACATCCGGTGCCTCTAGCCACCAT
CACCACTGTCCAAGGCACTGTCTTCTTTGGGAAGGTATCTGA

Translation (1343 aa):
MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFHCDDPPSPSPGKRKCPVGRRR
RPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHE
PMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHT
PDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSAS
SRWQETARTSCAFNSSVQQDPLSRHPPETCQMEAGSLFLLSSDGQNVVGIQVTETAKVNIWEEKENVGSF
TNQMTPEKHLNSLGNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKCSDPRLLQESFWKNYSQLFWGLP
SLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSHRQPFISSTPQFLPTPM
AQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRKQLEGRLALPSRVQK
SQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLRDESPGTS
QAKGKPSPWQSSTSTGESSKEAQKVKFQLERDLCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEESERN
LRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSWLAVNQALPVSNTHVKTSNLA
APKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLAGPSS
ATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHGPLKPP
PAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDVHGFEAPG
TSKSSLHPRVSVSQDPRKLCLMEEVVSEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLVSQVP
QGHLQSMPTGNMRASQELHDLMAARRSKLVQEEPRNPNCQGSCKSQRPMFPPIHKSEKSRKPNLEKHEER
LEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSHFGENIKQFFQWIFSKKKSKPAPVTAESQKTVK
NRSCVYSSSAEAQGLMTAVGQMLDKKMSLCHAHHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGRILSY
AASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPPQHWPKTSGASSHH
HHCPRHCLLWEGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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