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Report for CCDS7508.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7508.3 Public Homo sapiens 10 SFXN3 24 110 108 CCDS HistoryNCBI Gene:81855Re-query CCDS DB by CCDS ID:7508.3Re-query CCDS DB by GeneID:81855See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 7508.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393459.6 ENSP00000377103.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393459.6Link to Ensembl Protein Viewer:ENSP00000377103.1Re-query CCDS DB by Nucleotide ID:ENST00000393459Re-query CCDS DB by Protein ID:ENSP00000377103
Original member Current member NCBI NM_030971.6 NP_112233.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030971.6Link to Protein Sequence:NP_112233.3Re-query CCDS DB by Nucleotide ID:NM_030971Re-query CCDS DB by Protein ID:NP_112233Link to BLAST:NP_112233.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112233.3 321 Q9BWM7 321 100% 0 0

Chromosomal Locations for CCDS 7508.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101034695 101034855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101035497 101035667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101036003 101036101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101036486 101036561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101036723 101036808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101037076 101037203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101037382 101037431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101038643 101038692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101039175 101039222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101039489 101039585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGGTGAATTGCCTTTAGACATCAACATCCAGGAACCTCGCTGGGACCAAAGTACTTTCCTGGGCAGAG
CCCGGCACTTTTTCACTGTTACTGATCCTCGAAATCTGCTGCTGTCCGGGGCACAGCTGGAAGCTTCTCG
GAACATCGTGCAGAACTACAGGGCCGGCGTGGTGACCCCAGGGATCACCGAGGACCAGCTGTGGAGGGCC
AAGTATGTGTATGACTCCGCCTTCCATCCGGACACAGGGGAGAAGGTGGTCCTGATTGGCCGCATGTCAG
CCCAGGTGCCCATGAACATGACCATCACTGGCTGCATGCTCACATTCTACAGGAAGACCCCAACCGTGGT
GTTCTGGCAGTGGGTGAATCAGTCCTTCAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACACTCCC
ATCACTGTGAGGCAGCTGGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCCACGGCCCTGGGAC
TCAAATCCCTCACCAAGCACCTGCCCCCCTTGGTCGGCAGATTTGTGCCCTTTGCAGCAGTGGCAGCTGC
CAACTGCATCAACATCCCCCTGATGAGGCAGAGAGAGCTGCAGGTGGGCATCCCGGTGGCTGATGAGGCA
GGTCAGAGGCTTGGCTACTCGGTGACTGCAGCCAAGCAGGGAATCTTCCAGGTGGTGATTTCAAGAATCT
GCATGGCGATTCCTGCCATGGCCATCCCACCACTGATCATGGACACTCTGGAGAAGAAAGACTTCCTGAA
GCGCCGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGGCTTCTGCCTGGTATTTGCAACCCCC
CTGTGCTGTGCCCTATTCCCCCAGAAGAGCTCCATACACATAAGCAACCTGGAACCAGAGCTGAGAGCTC
AGATCCATGAGCAAAACCCCAGCGTTGAAGTGGTCTACTACAACAAGGGGCTTTGA

Translation (321 aa):
MGELPLDINIQEPRWDQSTFLGRARHFFTVTDPRNLLLSGAQLEASRNIVQNYRAGVVTPGITEDQLWRA
KYVYDSAFHPDTGEKVVLIGRMSAQVPMNMTITGCMLTFYRKTPTVVFWQWVNQSFNAIVNYSNRSGDTP
ITVRQLGTAYVSATTGAVATALGLKSLTKHLPPLVGRFVPFAAVAAANCINIPLMRQRELQVGIPVADEA
GQRLGYSVTAAKQGIFQVVISRICMAIPAMAIPPLIMDTLEKKDFLKRRPWLGAPLQVGLVGFCLVFATP
LCCALFPQKSSIHISNLEPELRAQIHEQNPSVEVVYYNKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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