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Report for CCDS73178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73178.1 Public Homo sapiens 10 R3HCC1L 24 110 108 CCDS HistoryNCBI Gene:27291Re-query CCDS DB by CCDS ID:73178.1Re-query CCDS DB by GeneID:27291See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612478.4 ENSP00000483494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612478.4Link to Ensembl Protein Viewer:ENSP00000483494.1Re-query CCDS DB by Nucleotide ID:ENST00000612478Re-query CCDS DB by Protein ID:ENSP00000483494
Original member Current member NCBI NM_001256619.2 NP_001243548.2 Accepted alive Link to Nucleotide Sequence:NM_001256619.2Link to Protein Sequence:NP_001243548.2Re-query CCDS DB by Nucleotide ID:NM_001256619Re-query CCDS DB by Protein ID:NP_001243548Link to BLAST:NP_001243548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243548.2 792 Q7Z5L2-1 792 100% 0 0

Chromosomal Locations for CCDS 73178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98208115 98209899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98211307 98211348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98231512 98231687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98234446 98234516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98235425 98235520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98236024 98236164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98244091 98244158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGCAGCAAGAATCAGAGAGATGCAGAGTTAGAGCCAGAAGGCCTGACATGGCACTTTATGTACCTAAAG
CTCGTAGGGGTGCAGTACTCCTTAAGACAGGTGATGAAGAAGAAAGCTGTGGTTCACCTAACTCTGTGGT
GAAAGAAAAGCAAAAAGAAAGTTCTCTCTCCCAAAAAGAAGTCTTTAAAGACAAACCGGAGGCTCGAAGA
CTAAATATCAATCCTGATAGAAAGGAGCATAATTGTAGAGAAGAAAAGAAATCTTCAACAAAATTAAGAA
TGGACACATGCCTTCAAAAAACAAATAGAGTTTGTTCTAAGAGAGGAACCACTGAATCCAAAGAAGTATT
ATCCCAAGGACAACAGCAGGGAGCCCCAAATGCTGGGGTTATAACTAATGCACCTTTGCAGAGACATTTT
AAACCAAAGAAGGTGGAGTGTTTGGAAGTTGAAACTACGGATGTGACAGGACATGAGAGGATACTTCTTT
CACAGGCCTGTTTAGAAATCAGCGAGGCTCAAGTTCCAAGCAAACCATTCCAAAATGTGGAATTCTGTGA
CTTCAGTAGGCATGAACCTGATGGGGAAGCATTTGAAGACAAAGATTTGGAAGGCAGAATTGAAACTGAT
ACCAAGGTTTTGGAGATACTATATGAGTTTCCTAGAGTTTTTAGTTCTGTCATGAAACCTGAGAATATGA
TTGTACCAATAAAACTAAGCTCTGATTCTGAAATTGTACAACAAAGCATGCAAACATCAGATGGAATATT
GAATCCCAGCAGCGGAGGCATCACCACTACTTCTGTTCCTGGAAGTCCAGATGGTGTCTTTGATCAAACT
TGCGTAGATTTTGAAGTTGAGAGTGTAGGTGGTATAGCCAATAGTACAGGTTTCATCTTAGATCAAAAAG
ATACAGATTCCATTCCTGCAACTATGGGTCACATCTCTCTGTCAGAGAGCACAAATGACACTGTTAGTCC
AGTAATGATTAGAGAATGTGAGAAGAATGACAGCACTGCTGATGAGTTACATGTAAAGCACGAACCTCCT
GATACAGCTGTCCTTGCTCATGAAACACATAGAGATAGTGGATTTAAGAATGTAGGTGACATTACCAATA
AAGCATGTATGATGGACACTACAGGTATGTCCTGTAGTGATCATGTAACTGTTGATAGCCCTTATGTAGT
TGCAGTTAGAATAGCTGATGAGACCTCTATTAATACACGAAGTTTCTCAAAGTTTGTAGGAATGAGTGCA
GATGCAACCCCTCTTCATGTAGCTAGAAGTGGGAATGACACTGAAGATTTCAGCAACCCTTCTGCTTGCT
CAGATATTTATGGTGAGAGTATTTCATCTCATTTTACAGAGTCAACAGGAAAGTTGATAGAGAGCTTGTC
AGATTGTGCTTCCTCCTTACCTATAAAAAAGATTGCTGGTAGTAATTATAACACTTTTTTGGACTCTGAA
CTCAGTATGTTAAATGGGACAAAAGTTCTTTCAGACAGTGCCGTGGGCATTGACCTGGGTAGTACTGGTG
ATACAACAGAAGCATTGCACGAACTAAGAACTGCCGAAGAGTTCAAAACAGAAGAGCAAGATGACTCAGG
GAGTATAGAATTTGGTGTATCTTTTCCTGATAGGGAATCATCATCTATGGAAACATCCATCGAACCAAAA
GCAACTGAAACTTCTCACACAGAGGGAATTACTGCCATTGAGGAGAGCTGGGAGTCTATGTTTAACGATG
ATGGTGACTGCCTGGATCCACGTCTTCTACAAGAGGGGATTCTGATGCACATAAAGCCCGAGAACCACTG
CTCAAAGTTATCAGGGAATACCAAGAGCAGAGAGAGCATCCAGGAACCTAGATCTGATTACTACAATCAT
GAAGTTCCTGATATTGACCTCAGTGATTGTGAATTCCCACATGTCATTGAAATTTATGACTTTCCCCAAG
AATTTCATACTGAAGACCTTCTACGGGTTTTCTGCAGTTATCAAAAGAAAGGATTTGATATTAAATGGGT
GGATGATACACATGCCCTAGGAGTATTCTCCAGTCCAATTACAGCTCGTGATGCGTTGGGTATTAAACAC
ACCATGGTGAAGATTCGTCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCTTATGCTG
AGTTCCTCCAGCCAGCAAAGGAGCGTCCTGAGACTTCAGCAGCCCTAGCCAGAAGGTTAGTCATCAGTGC
CCTTGGGGTTCGAAGTAAGCAGAGCAAAACCGAACGAGAAGCAGAGCTCAAGAAACTGCAAGAAGCCAGA
GAGAGAAAGCGGTTGGAAGCCAAGCAACGGGAAGACATCTGGGAAGGCAGAGACCAGTCTACAGTTTGA

Translation (792 aa):
MQQESERCRVRARRPDMALYVPKARRGAVLLKTGDEEESCGSPNSVVKEKQKESSLSQKEVFKDKPEARR
LNINPDRKEHNCREEKKSSTKLRMDTCLQKTNRVCSKRGTTESKEVLSQGQQQGAPNAGVITNAPLQRHF
KPKKVECLEVETTDVTGHERILLSQACLEISEAQVPSKPFQNVEFCDFSRHEPDGEAFEDKDLEGRIETD
TKVLEILYEFPRVFSSVMKPENMIVPIKLSSDSEIVQQSMQTSDGILNPSSGGITTTSVPGSPDGVFDQT
CVDFEVESVGGIANSTGFILDQKDTDSIPATMGHISLSESTNDTVSPVMIRECEKNDSTADELHVKHEPP
DTAVLAHETHRDSGFKNVGDITNKACMMDTTGMSCSDHVTVDSPYVVAVRIADETSINTRSFSKFVGMSA
DATPLHVARSGNDTEDFSNPSACSDIYGESISSHFTESTGKLIESLSDCASSLPIKKIAGSNYNTFLDSE
LSMLNGTKVLSDSAVGIDLGSTGDTTEALHELRTAEEFKTEEQDDSGSIEFGVSFPDRESSSMETSIEPK
ATETSHTEGITAIEESWESMFNDDGDCLDPRLLQEGILMHIKPENHCSKLSGNTKSRESIQEPRSDYYNH
EVPDIDLSDCEFPHVIEIYDFPQEFHTEDLLRVFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKH
TMVKIRPLSQATRAAKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLQEAR
ERKRLEAKQREDIWEGRDQSTV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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