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Report for CCDS7240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7240.1 Public Homo sapiens 10 SGMS1 24 110 108 CCDS HistoryNCBI Gene:259230Re-query CCDS DB by CCDS ID:7240.1Re-query CCDS DB by GeneID:259230See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361781.7 ENSP00000354829.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361781.7Link to Ensembl Protein Viewer:ENSP00000354829.2Re-query CCDS DB by Nucleotide ID:ENST00000361781Re-query CCDS DB by Protein ID:ENSP00000354829
Original member Current member NCBI NM_147156.4 NP_671512.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147156.4Link to Protein Sequence:NP_671512.1Re-query CCDS DB by Nucleotide ID:NM_147156Re-query CCDS DB by Protein ID:NP_671512Link to BLAST:NP_671512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671512.1 413 Q86VZ5-1 413 100% 0 0

Chromosomal Locations for CCDS 7240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 50307142 50307321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50307982 50308148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50311262 50311415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50327205 50327322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50343492 50344114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGAAGGAAGTGGTTTATTGGTCACCCAAGAAGGTGGCAGACTGGCTGCTGGAGAATGCTATGCCAGAAT
ACTGTGAGCCTCTGGAGCATTTCACAGGCCAGGACTTGATCAACCTAACCCAAGAGGATTTCAAAAAACC
CCCCTTGTGCCGAGTCTCCTCTGACAATGGGCAGCGGCTCCTGGACATGATAGAAACCCTGAAAATGGAG
CACCATTTGGAAGCACACAAGAACGGCCATGCCAATGGGCACCTCAACATTGGCGTAGACATCCCCACCC
CCGACGGCAGCTTCAGCATCAAGATTAAACCCAACGGGATGCCAAATGGGTATAGGAAAGAGATGATAAA
GATCCCCATGCCAGAACTGGAGCGCTCTCAGTACCCCATGGAGTGGGGCAAGACTTTTCTGGCCTTTCTT
TATGCACTTTCCTGTTTCGTTCTCACCACAGTGATGATCTCGGTCGTCCACGAACGAGTACCTCCTAAGG
AGGTGCAGCCTCCACTACCGGACACATTTTTTGACCATTTTAACCGGGTGCAGTGGGCCTTTTCTATTTG
TGAAATTAATGGCATGATCCTTGTAGGACTCTGGTTAATTCAGTGGCTGCTCTTAAAATACAAGTCTATT
ATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTA
CACTCCCAGTACCTGGTATGCATTTCAACTGTTCTCCGAAGCTTTTCGGAGACTGGGAAGCCCAACTGCG
AAGAATAATGAAGCTCATTGCTGGAGGTGGCTTGTCTATCACTGGCTCTCACAACATGTGTGGGGACTAT
CTGTACAGCGGCCACACGGTCATGCTAACACTTACCTACTTATTTATCAAAGAGTATTCCCCTCGGCGAC
TCTGGTGGTATCACTGGATTTGCTGGCTTCTCAGCGTAGTTGGAATCTTCTGTATTCTCTTAGCGCATGA
CCACTACACTGTGGACGTGGTGGTGGCATATTACATCACCACGAGACTCTTCTGGTGGTATCACACTATG
GCCAATCAGCAAGTGCTAAAGGAAGCTTCCCAGATGAACCTCCTGGCCAGGGTGTGGTGGTACAGGCCAT
TTCAGTACTTTGAAAAGAATGTCCAAGGAATTGTACCTCGATCTTACCATTGGCCTTTCCCCTGGCCAGT
AGTCCACCTCAGTAGGCAAGTTAAATACAGCCGGCTGGTGAATGACACATAA

Translation (413 aa):
MKEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLCRVSSDNGQRLLDMIETLKME
HHLEAHKNGHANGHLNIGVDIPTPDGSFSIKIKPNGMPNGYRKEMIKIPMPELERSQYPMEWGKTFLAFL
YALSCFVLTTVMISVVHERVPPKEVQPPLPDTFFDHFNRVQWAFSICEINGMILVGLWLIQWLLLKYKSI
ISRRFFCIVGTLYLYRCITMYVTTLPVPGMHFNCSPKLFGDWEAQLRRIMKLIAGGGLSITGSHNMCGDY
LYSGHTVMLTLTYLFIKEYSPRRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVVAYYITTRLFWWYHTM
ANQQVLKEASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWPFPWPVVHLSRQVKYSRLVNDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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