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Report for CCDS68943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68943.1 Public Homo sapiens 5 PRRC1 24 110 108 CCDS HistoryNCBI Gene:133619Re-query CCDS DB by CCDS ID:68943.1Re-query CCDS DB by GeneID:133619See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512635.2 ENSP00000421965.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512635.2Link to Ensembl Protein Viewer:ENSP00000421965.2Re-query CCDS DB by Nucleotide ID:ENST00000512635Re-query CCDS DB by Protein ID:ENSP00000421965
Original member Current member NCBI NM_001286808.2 NP_001273737.1 Accepted alive Link to Nucleotide Sequence:NM_001286808.2Link to Protein Sequence:NP_001273737.1Re-query CCDS DB by Nucleotide ID:NM_001286808Re-query CCDS DB by Protein ID:NP_001273737Link to BLAST:NP_001273737.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273737.1 462 Q96M27-3 462 100% 0 0

Chromosomal Locations for CCDS 68943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 127523480 127523582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127524531 127524920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127526618 127526778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127530294 127530396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127533623 127533786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127539040 127539143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127547819 127547921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127551707 127551878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127553797 127553885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGATGGAAGAGAGTGGAATAGAGACAACACCACCTGGGACTCCTCCACCAAATCCTGCAGGGCTGGCTG
CTACTGCTATGTCTTCTACCCCTGTTCCATTAGCGGCAACCAGTTCTTTTTCTTCTCCAAATGTATCCTC
CATGGAGTCCTTCCCACCACTCGCATACTCTACTCCTCAGCCGCCCCTTCCTCCTGTGAGGCCTTCAGCA
CCATTACCTTTTGTGCCTCCTCCTGCAGTTCCTTCTGTCCCACCACTTGTTACTTCTATGCCACCTCCTG
TTTCTCCATCAACTGCTGCTGCCTTCGGTAATCCTCCTGTATCTCACTTCCCACCTTCAACTTCTGCCCC
AAACACTCTTTTACCTGCACCCCCTTCGGGTCCTCCTATATCAGGATTTTCTGTTGGTTCAACTTATGAC
ATTACAAGGGGACATGCTGGGAGAGCTCCCCAGACACCCCTGATGCCATCATTTTCTGCACCTTCAGGAA
CAGGTCTTTTGCCAACTCCTATTACTCAGCAAGCCAGTTTGACATCTCTGGCACAGGGAACTGGAACCAC
ATCAGCCATTACTTTCCCAGAGGAGCAAGAAGACCCTAGAATTACTAGAGGTCAGGATGAAGCATCTGCT
GGTGGAATCTGGGGTTTTATTAAGGGTGTGGCTGGGAATCCTATGGTGAAGTCTGTGCTTGATAAGACAA
AACATTCAGTAGAAAGCATGATTACAACGCTGGACCCTGGCATGGCTCCCTATATCAAATCTGGAGGTGA
ACTGGATATTGTAGTGACCTCAAATAAAGAAGTAAAAGTTGCTGCTGTCCGAGATGCCTTCCAGGAGGTC
TTTGGCTTAGCTGTGGTTGTAGGGGAAGCTGGACAGTCCAATATTGCCCCACAACCAGTGGGCTATGCAG
CTGGATTAAAAGGTGCTCAGGAACGGATAGATAGCTTGCGTCGAACTGGGGTGATCCATGAAAAACAGAC
AGCTGTGTCAGTAGAAAACTTCATTGCAGAATTGCTGCCTGACAAATGGTTTGACATTGGTTGTTTGGTG
GTTGAAGATCCTGTCCATGGCATTCATCTAGAAACATTTACACAAGCCACACCAGTGCCTTTGGAATTTG
TACAGCAGGCTCAAAGTCTAACTCCCCAGGACTATAATCTGAGGTGGTCAGGCCTTTTGGTGACAGTGGG
TGAAGTCCTGGAAAAGAGTTTACTGAATGTCAGCCGGACTGATTGGCACATGGCATTTACTGGGATGTCC
CGTCGGCAGATGATCTACAGTGCAGCCAGAGCGATAGCGGATGATTATTTTCCTAGAATCCCCAAAGAGC
AGTGGCAGTCCATGGCTTGGTTGAAGCTAGAAATTTTCCTGCCCCTGGTGACCTGGTAA

Translation (462 aa):
MMEESGIETTPPGTPPPNPAGLAATAMSSTPVPLAATSSFSSPNVSSMESFPPLAYSTPQPPLPPVRPSA
PLPFVPPPAVPSVPPLVTSMPPPVSPSTAAAFGNPPVSHFPPSTSAPNTLLPAPPSGPPISGFSVGSTYD
ITRGHAGRAPQTPLMPSFSAPSGTGLLPTPITQQASLTSLAQGTGTTSAITFPEEQEDPRITRGQDEASA
GGIWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEV
FGLAVVVGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHEKQTAVSVENFIAELLPDKWFDIGCLV
VEDPVHGIHLETFTQATPVPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHMAFTGMS
RRQMIYSAARAIADDYFPRIPKEQWQSMAWLKLEIFLPLVTW


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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