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Report for CCDS6757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6757.1 Public Homo sapiens 9 PGAP4 24 110 108 CCDS HistoryNCBI Gene:84302Re-query CCDS DB by CCDS ID:6757.1Re-query CCDS DB by GeneID:84302See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6757.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374847.5 ENSP00000363980.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374847.5Link to Ensembl Protein Viewer:ENSP00000363980.1Re-query CCDS DB by Nucleotide ID:ENST00000374847Re-query CCDS DB by Protein ID:ENSP00000363980
Original member Current member EBI ENST00000374848.8 ENSP00000363981.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374848.8Link to Ensembl Protein Viewer:ENSP00000363981.3Re-query CCDS DB by Nucleotide ID:ENST00000374848Re-query CCDS DB by Protein ID:ENSP00000363981
Original member Current member EBI ENST00000374851.1 ENSP00000363984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374851.1Link to Ensembl Protein Viewer:ENSP00000363984.1Re-query CCDS DB by Nucleotide ID:ENST00000374851Re-query CCDS DB by Protein ID:ENSP00000363984
Original member Current member NCBI NM_001303107.2 NP_001290036.1 Accepted alive Link to Nucleotide Sequence:NM_001303107.2Link to Protein Sequence:NP_001290036.1Re-query CCDS DB by Nucleotide ID:NM_001303107Re-query CCDS DB by Protein ID:NP_001290036Link to BLAST:NP_001290036.1
Original member Current member NCBI NM_001303108.2 NP_001290037.1 Accepted alive Link to Nucleotide Sequence:NM_001303108.2Link to Protein Sequence:NP_001290037.1Re-query CCDS DB by Nucleotide ID:NM_001303108Re-query CCDS DB by Protein ID:NP_001290037Link to BLAST:NP_001290037.1
Original member Current member NCBI NM_001371233.1 NP_001358162.1 Accepted alive Link to Nucleotide Sequence:NM_001371233.1Link to Protein Sequence:NP_001358162.1Re-query CCDS DB by Nucleotide ID:NM_001371233Re-query CCDS DB by Protein ID:NP_001358162Link to BLAST:NP_001358162.1
Original member Current member NCBI NM_032342.3 NP_115718.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032342.3Link to Protein Sequence:NP_115718.1Re-query CCDS DB by Nucleotide ID:NM_032342Re-query CCDS DB by Protein ID:NP_115718Link to BLAST:NP_115718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290036.1 403 Q9BRR3 403 100% 0 0
NP_001290037.1 403 Q9BRR3 403 100% 0 0
NP_001358162.1 403 Q9BRR3 403 100% 0 0
NP_115718.1 403 Q9BRR3 403 100% 0 0

Chromosomal Locations for CCDS 6757.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 101475881 101477092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAGCACTTCAACCTCTCCAGCTGCCATGCTCCTCCGGAGGCTGCGGCGACTCTCCTGGGGCAGCACTG
CTGTCCAGCTCTTCATCCTAACAGTGGTGACGTTTGGCCTGCTGGCCCCCCTGGCCTGTCACCGACTTCT
ACACTCTTACTTCTATCTGCGCCATTGGCATCTGAACCAAATGAGCCAAGAGTTCCTGCAGCAAAGCTTG
AAAGAGGGTGAGGCTGCCCTCCACTATTTTGAGGAGCTTCCCTCTGCCAATGGCTCAGTGCCCATTGTCT
GGCAGGCCACCCCCCGGCCCTGGCTGGTGATCACCATCATCACTGTGGACAGGCAGCCTGGCTTCCACTA
CGTCCTGCAGGTTGTGTCCCAGTTCCACCGGCTTCTTCAGCAATGTGGCCCCCAGTGCGAGGGGCACCAA
CTCTTCCTGTGCAACGTGGAGCGTAGTGTGAGCCATTTTGATGCCAAGTTGCTCTCCAAGTATGTCCCTG
TGGCCAATCGCTATGAGGGCACTGAGGATGATTATGGTGATGACCCTTCGACCAACTCGTTTGAGAAAGA
GAAGCAGGACTATGTCTATTGCCTGGAGTCATCCCTGCAGACCTACAACCCAGACTACGTCCTGATGGTA
GAAGACGATGCTGTACCAGAAGAGCAGATCTTCCCAGTCTTGGAGCACCTTCTGCGGGCTCGCTTCTCTG
AGCCACATCTCAGAGATGCCCTTTATCTCAAGCTGTATCACCCCGAGAGGCTCCAGCACTACATCAATCC
AGAGCCCATGCGGATCCTGGAATGGGTTGGTGTAGGCATGTTGCTGGGGCCCTTACTAACCTGGATATAC
ATGAGGTTTGCCAGCCGCCCAGGGTTTAGCTGGCCTGTAATGCTCTTCTTCTCCCTGTATAGCATGGGTC
TGGTGGAGCTGGTGGGTCGGCACTATTTCCTGGAACTGCGGCGGCTGAGTCCTTCCCTGTACAGTGTGGT
TCCTGCCTCTCAGTGTTGCACCCCAGCCATGCTCTTCCCGGCACCTGCGGCCCGCCGGACCCTCACCTAC
CTGTCCCAAGTGTACTGCCACAAGGGCTTTGGCAAGGACATGGCACTGTACTCGCTGTTGAGGGCCAAGG
GAGAGAGGGCCTATGTAGTGGAGCCGAACCTCGTGAAACACATCGGGCTCTTCTCCAGTCTCCGGTACAA
CTTTCATCCCAGTCTCCTCTAG

Translation (403 aa):
MSTSTSPAAMLLRRLRRLSWGSTAVQLFILTVVTFGLLAPLACHRLLHSYFYLRHWHLNQMSQEFLQQSL
KEGEAALHYFEELPSANGSVPIVWQATPRPWLVITIITVDRQPGFHYVLQVVSQFHRLLQQCGPQCEGHQ
LFLCNVERSVSHFDAKLLSKYVPVANRYEGTEDDYGDDPSTNSFEKEKQDYVYCLESSLQTYNPDYVLMV
EDDAVPEEQIFPVLEHLLRARFSEPHLRDALYLKLYHPERLQHYINPEPMRILEWVGVGMLLGPLLTWIY
MRFASRPGFSWPVMLFFSLYSMGLVELVGRHYFLELRRLSPSLYSVVPASQCCTPAMLFPAPAARRTLTY
LSQVYCHKGFGKDMALYSLLRAKGERAYVVEPNLVKHIGLFSSLRYNFHPSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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