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Report for CCDS65738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65738.1 Public Homo sapiens 1 STX6 24 110 108 CCDS HistoryNCBI Gene:10228Re-query CCDS DB by CCDS ID:65738.1Re-query CCDS DB by GeneID:10228See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 65738.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542060.5 ENSP00000440188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542060.5Link to Ensembl Protein Viewer:ENSP00000440188.1Re-query CCDS DB by Nucleotide ID:ENST00000542060Re-query CCDS DB by Protein ID:ENSP00000440188
Original member Current member NCBI NM_001286210.2 NP_001273139.1 Accepted alive Link to Nucleotide Sequence:NM_001286210.2Link to Protein Sequence:NP_001273139.1Re-query CCDS DB by Nucleotide ID:NM_001286210Re-query CCDS DB by Protein ID:NP_001273139Link to BLAST:NP_001273139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273139.1 154 O43752-2 154 100% 0 0

Chromosomal Locations for CCDS 65738.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180976570 180976646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180984677 180984771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180988239 180988345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180989984 180990109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180993363 180993422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGAAAGATCAGATGTCAACTTCATCTGTGCAGGCATTAGCTGAAAGAAAAAATAGACAGGCACTGCTGG
GAGACAGTGGCAGCCAGAACTGGAGCACTGGAACAACAGATAAATATGGGCGTCTGGACCGAGAGCTCCA
GAGAGCCAATTCTCATTTCATTGAGGAGCAGCAGGCACAGCAGCAGTTGATCGTGGAACAGCAGGATGAG
CAGTTGGAGCTGGTCTCTGGCAGCATCGGGGTGCTGAAGAACATGTCCCAGCGCATCGGAGGGGAGCTGG
AGGAACAGGCAGTTATGTTGGAAGATTTCTCTCACGAATTGGAGAGCACTCAGTCCCGGCTGGACAATGT
GATGAAGAAACTTGCAAAAGTATCTCATATGACCAGTGATCGGCGCCAATGGTGTGCCATAGCCATCCTC
TTTGCAGTCCTGTTGGTTGTGCTCATCCTCTTCTTAGTGCTGTGA

Translation (154 aa):
MKDQMSTSSVQALAERKNRQALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDE
QLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCAIAIL
FAVLLVVLILFLVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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