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Report for CCDS6410.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6410.2 Public Homo sapiens 8 FAM83H 24 110 108 CCDS HistoryNCBI Gene:286077Re-query CCDS DB by CCDS ID:6410.2Re-query CCDS DB by GeneID:286077See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6410.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388913.4 ENSP00000373565.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000388913.4Link to Ensembl Protein Viewer:ENSP00000373565.3Re-query CCDS DB by Nucleotide ID:ENST00000388913Re-query CCDS DB by Protein ID:ENSP00000373565
Original member Current member NCBI NM_198488.5 NP_940890.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198488.5Link to Protein Sequence:NP_940890.4Re-query CCDS DB by Nucleotide ID:NM_198488Re-query CCDS DB by Protein ID:NP_940890Link to BLAST:NP_940890.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940890.4 1179 Q6ZRV2 1179 100% 0 0

Chromosomal Locations for CCDS 6410.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143725921 143728723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143728967 143729091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143729159 143729323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143730136 143730582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3540 nt):
ATGGCCCGTCGCTCTCAGAGCTCCTCGCAGGGGGACAACCCACTGGCACCCGGGTACCTGCCGCCTCACT
ACAAAGAGTACTACCGCCTGGCGGTGGATGCACTGGCCGAGGGTGGCTCGGAGGCCTACAGCCGCTTCCT
CGCTACCGAGGGGGCACCAGACTTCCTGTGCCCTGAAGAGCTGGAACATGTGAGCCGACACCTTCGGCCT
CCGCAGTATGTTACCCGAGAGCCACCTGAAGGCAGCCTTCTCGACGTGGACATGGATGGCTCCTCGGGTA
CATACTGGCCAGTGAACTCAGACCAGGCCGTGCCTGAGCTTGATTTGGGCTGGCCTCTGACCTTCGGCTT
CCAGGGCACCGAGGTGACCACCTTGGTGCAGCCACCGCCCCCCGACAGCCCCAGTATCAAGGATGAGGCC
CGCAGGATGATCCGTTCCGCCCAGCAGGTGGTGGCCGTGGTGATGGACATGTTCACTGATGTGGACCTGC
TCAGCGAAGTGCTGGAGGCCGCGGCCCGTCGGGTCCCAGTCTACATCCTGCTGGATGAGATGAACGCGCA
GCACTTCCTGGACATGGCCGACAAGTGCCGTGTCAACCTGCAGCACGTGGATTTCCTGCGCGTACGGACT
GTGGCGGGCCCCACCTACTACTGCCGCACTGGGAAGTCCTTCAAGGGCCACGTCAAGGAGAAGTTCCTGC
TGGTGGACTGTGCCGTGGTGATGAGTGGGAGCTACAGCTTCATGTGGTCCTTTGAGAAGATCCACCGCAG
CCTGGCGCACGTGTTCCAAGGAGAGCTGGTCTCCAGCTTCGACGAGGAGTTCCGCATCCTCTTCGCGCAG
TCCGAGCCGCTTGTGCCCTCGGCCGCGGCCCTGGCCCGCATGGACGCCTATGCCCTGGCTCCGTATGCCG
GGGCCGGGCCTCTCGTGGGCGTCCCTGGGGTCGGGGCGCCAACCCCCTTCTCCTTCCCTAAACGAGCGCA
CCTCCTGTTCCCGCCACCCCGGGAAGAGGGCCTGGGCTTCCCCTCCTTCCTCGACCCGGACCGCCACTTC
CTGTCGGCCTTCCGCCGGGAGGAGCCGCCGCGGATGCCGGGGGGCGCGCTGGAACCGCACGCGGGGCTGC
GGCCGCTCTCGCGGCGCCTGGAGGCCGAGGCCGGGCCGGCTGGGGAGCTCGCGGGCGCGCGGGGCTTCTT
CCAGGCGCGGCACCTGGAGATGGACGCCTTCAAGCGGCACAGCTTCGCGACCGAGGGCGCGGGCGCCGTG
GAGAACTTCGCGGCCGCGCGGCAGGTGTCGCGGCAGACGTTCCTCAGCCACGGCGACGACTTCCGCTTCC
AGACCAGCCACTTCCACCGTGACCAGCTCTACCAGCAGCAGTACCAGTGGGACCCGCAGCTCACGCCGGC
GCGCCCGCAAGGCCTGTTCGAGAAGCTTCGCGGGGGCCGCGCGGGTTTCGCGGACCCGGATGACTTCACC
CTGGGCGCCGGGCCCCGCTTCCCGGAGCTCGGACCCGACGGGCACCAGCGGCTGGACTACGTGCCGTCCA
GCGCGTCCCGCGAGGTGCGCCACGGCTCGGACCCCGCCTTCGCGCCCGGACCCCGCGGCCTGGAGCCCAG
CGGAGCCCCGCGCCCCAACCTGACCCAGCGCTTCCCATGCCAGGCCGCGGCGAGGCCGGGCCCAGACCCC
GCTCCCGAGGCGGAGCCGGAGCGCAGGGGCGGGCCCGAGGGGCGGGCAGGGCTGCGGCGCTGGCGTTTGG
CCTCCTACTTGAGCGGCTGCCACGGCGAGGATGGGGGCGACGACGGCCTACCGGCGCCCATGGAAGCGGA
GGCTTACGAAGACGACGTGCTGGCTCCCGGGGGCCGGGCACCTGCCGGCGACCTGCTCCCCTCGGCCTTC
CGCGTCCCAGCAGCCTTCCCCACCAAGGTCCCGGTGCCAGGCCCGGGCAGCGGCGGCAACGGCCCAGAGC
GCGAGGGCCCGGAGGAGCCTGGCCTGGCCAAGCAGGACTCATTCCGCTCGCGCCTGAACCCCCTGGTCCA
GCGCAGCTCCAGGCTGCGCTCCTCGCTCATCTTCAGCACGTCACAGGCCGAGGGCGCGGCCGGGGCTGCG
GCGGCCACTGAGAAGGTGCAGCTGCTGCACAAGGAGCAGACGGTCAGCGAGACGCTGGGGCCCGGCGGAG
AGGCCGTGCGCTCCGCGGCTTCCACCAAGGTGGCGGAGCTGCTGGAGAAGTACAAGGGCCCAGCCCGTGA
TCCCGGCGGCGGCGCGGGCGCCATCACCGTTGCCAGCCACAGCAAGGCCGTCGTGTCCCAGGCGTGGCGG
GAAGAGGTGGCGGCCCCAGGTGCCGTGGGGGGCGAGCGCCGCAGCCTCGAGAGCTGCCTGCTGGACCTGC
GCGACTCCTTTGCACAGCAGCTGCACCAGGAGGCGGAGCGGCAGCCGGGAGCCGCGTCGCTCACCGCGGC
GCAGCTGCTCGACACACTGGGCCGGAGCGGCTCCGACCGCCTGCCTTCCCGCTTCCTCTCTGCCCAGAGC
CACTCAACGTCCCCGCAAGGGCTGGACAGCCCTCTGCCGCTGGAAGGGTCCGGAGCGCACCAGGTGCTCC
ATAATGAGTCAAAAGGGAGCCCCACCTCGGCTTACCCTGAGCGGAAGGGGAGCCCCACGCCTGGGTTTTC
CACTCGAAGAGGAAGTCCAACTACAGGATTTATCGAGCAGAAGGGGAGCCCCACCTCAGCCTACCCCGAG
CGCAGGGGTAGTCCGGTGCCCCCCGTGCCGGAGCGCAGGAGCAGTCCGGTGCCCCCCGTGCCGGAGCGCA
GGGGCAGCCTCACCCTTACCATCTCCGGGGAGTCCCCGAAGGCCGGGCCCGCGGAGGAGGGGCCGAGCGG
CCCCATGGAAGTCCTGCGCAAAGGCTCCTTGCGTCTTAGGCAGCTGCTGAGCCCCAAGGGCGAGCGGCGC
ATGGAGGATGAGGGTGGCTTCCCAGTGCCGCAGGAGAACGGCCAACCCGAGAGCCCGCGGCGTCTGTCAC
TGGGCCAGGGTGACAGCACGGAGGCTGCCACAGAAGAGCGGGGTCCGCGGGCGCGCCTGTCCTCAGCCAC
GGCCAACGCCTTGTACAGCAGCAACCTTCGGGATGACACGAAGGCCATTCTGGAGCAGATCAGTGCCCAC
GGCCAGAAGCACCGTGCGGTCCCTGCCCCGAGCCCCGGCCCGACCCACAACAGCCCCGAGCTAGGCCGTC
CACCGGCTGCTGGCGTCCTGGCCCCAGATATGTCCGACAAGGACAAGTGTTCAGCCATCTTCCGCTCGGA
CAGCTTGGGGACCCAGGGCCGGCTGAGCCGCACGCTGCCAGCCAGCGCGGAGGAGCGCGATCGGCTGCTG
CGCCGCATGGAGAGCATGCGCAAGGAGAAGCGCGTGTACAGCCGCTTCGAGGTCTTCTGCAAGAAAGAGG
AGGCCAGCAGCCCTGGGGCAGGGGAAGGCCCCGCGGAGGAGGGCACCAGGGACAGCAAGGTGGGCAAGTT
CGTGCCCAAGATCCTGGGCACGTTCAAAAGCAAGAAGTGA

Translation (1179 aa):
MARRSQSSSQGDNPLAPGYLPPHYKEYYRLAVDALAEGGSEAYSRFLATEGAPDFLCPEELEHVSRHLRP
PQYVTREPPEGSLLDVDMDGSSGTYWPVNSDQAVPELDLGWPLTFGFQGTEVTTLVQPPPPDSPSIKDEA
RRMIRSAQQVVAVVMDMFTDVDLLSEVLEAAARRVPVYILLDEMNAQHFLDMADKCRVNLQHVDFLRVRT
VAGPTYYCRTGKSFKGHVKEKFLLVDCAVVMSGSYSFMWSFEKIHRSLAHVFQGELVSSFDEEFRILFAQ
SEPLVPSAAALARMDAYALAPYAGAGPLVGVPGVGAPTPFSFPKRAHLLFPPPREEGLGFPSFLDPDRHF
LSAFRREEPPRMPGGALEPHAGLRPLSRRLEAEAGPAGELAGARGFFQARHLEMDAFKRHSFATEGAGAV
ENFAAARQVSRQTFLSHGDDFRFQTSHFHRDQLYQQQYQWDPQLTPARPQGLFEKLRGGRAGFADPDDFT
LGAGPRFPELGPDGHQRLDYVPSSASREVRHGSDPAFAPGPRGLEPSGAPRPNLTQRFPCQAAARPGPDP
APEAEPERRGGPEGRAGLRRWRLASYLSGCHGEDGGDDGLPAPMEAEAYEDDVLAPGGRAPAGDLLPSAF
RVPAAFPTKVPVPGPGSGGNGPEREGPEEPGLAKQDSFRSRLNPLVQRSSRLRSSLIFSTSQAEGAAGAA
AATEKVQLLHKEQTVSETLGPGGEAVRSAASTKVAELLEKYKGPARDPGGGAGAITVASHSKAVVSQAWR
EEVAAPGAVGGERRSLESCLLDLRDSFAQQLHQEAERQPGAASLTAAQLLDTLGRSGSDRLPSRFLSAQS
HSTSPQGLDSPLPLEGSGAHQVLHNESKGSPTSAYPERKGSPTPGFSTRRGSPTTGFIEQKGSPTSAYPE
RRGSPVPPVPERRSSPVPPVPERRGSLTLTISGESPKAGPAEEGPSGPMEVLRKGSLRLRQLLSPKGERR
MEDEGGFPVPQENGQPESPRRLSLGQGDSTEAATEERGPRARLSSATANALYSSNLRDDTKAILEQISAH
GQKHRAVPAPSPGPTHNSPELGRPPAAGVLAPDMSDKDKCSAIFRSDSLGTQGRLSRTLPASAEERDRLL
RRMESMRKEKRVYSRFEVFCKKEEASSPGAGEGPAEEGTRDSKVGKFVPKILGTFKSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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